Beck, J. M., Ma, W. J., Kiani, R., Hanks, T., Churchland, A. K., Roitman, J., Shadlen, M. N., Latham, P. E., Pouget, A. (2008) Probabilistic Population Codes for Bayesian Decision Making. Neuron, 60 (6). pp. 1142-1152. ISSN 08966273 (ISSN)
Carandini, M., Churchland, A. K. (July 2013) Probing perceptual decisions in rodents. Nature Neuroscience, 16 (7). pp. 824-831. ISSN 1097-6256
Churchland, A. K., Ditterich, J. (2012) New advances in understanding decisions among multiple alternatives. Current Opinion in Neurobiology. ISSN 0959-4388
Churchland, A. K., Kiani, R., Shadlen, M. N. (2008) Decision-making with multiple alternatives. Nature Neuroscience, 11 (6). pp. 693-702. ISSN 10976256 (ISSN)
Churchland, Anne K., Kiani, Roozbeh (October 2016) Three challenges for connecting model to mechanism in decision-making. Current Opinion in Behavioral Sciences, 11. pp. 74-80. ISSN 2352-1546
Drugowitsch, J., Moreno-Bote, R., Churchland, A. K., Shadlen, M. N., Pouget, A. (March 2012) The Cost of Accumulating Evidence in Perceptual Decision Making. Journal of Neuroscience, 32 (11). pp. 3612-3628. ISSN 0270-6474
Engel, Tatiana, Wang, Xiao-Jing (2009) Category learning and decision making: a cortical circuit model. Frontiers in Systems Neuroscience. p. 55. ISSN 1662-5137
Felsen, G., Mainen, Z. F. (July 2012) Midbrain contributions to sensorimotor decision making. Journal of Neurophysiology, 108 (1). pp. 135-147. ISSN 0022-3077
Findling, Charles, Hubert, Felix, Acerbi, Luigi, Benson, Brandon, Benson, Julius, Birman, Daniel, Bonacchi, Niccolò, Carandini, Matteo, Catarino, Joana A, Chapuis, Gaelle A, Churchland, Anne K, Dan, Yang, DeWitt, Eric EJ, Engel, Tatiana A, Fabbri, Michele, Faulkner, Mayo, Fiete, Ila Rani, Freitas-Silva, Laura, Gerçek, Berk, Harris, Kenneth D, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Huntenburg, Julia M, Khanal, Anup, Krasniak, Chris, Langdon, Christopher, Latham, Peter E, P Lau, Petrina Y, Mainen, Zach, Meijer, Guido T, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Noel, Jean-Paul, Nylund, Kai, Pan-Vazquez, Alejandro, Paninski, Liam, Pillow, Jonathan, Rossant, Cyrille, Roth, Noam, Schaeffer, Rylan, Schartner, Michael, Shi, Yanliang, Socha, Karolina Z, Steinmetz, Nicholas A, Svoboda, Karel, Tessereau, Charline, Urai, Anne E, Wells, Miles J, West, Steven Jon, Whiteway, Matthew R, Winter, Olivier, Witten, Ilana B, Zador, Anthony, Dayan, Peter, Pouget, Alexandre (July 2023) Brain-wide representations of prior information in mouse decision-making. bioRxiv. (Submitted)
Genkin, Mikhail, Hughes, Owen, Engel, Tatiana A (October 2021) Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories. Nature Communications, 12 (1). p. 5986. ISSN 2041-1723
Hangya, B., Sanders, J. L., Kepecs, A. (September 2016) A Mathematical Framework for Statistical Decision Confidence. Neural Comput, 28 (9). pp. 1840-1858. ISSN 1530-888X (Electronic)0899-7667 (Linking)
Hirokawa, J., Vaughan, A., Masset, P., Ott, T., Kepecs, A. (December 2019) Frontal cortex neuron types categorically encode single decision variables. Nature, 576 (7787). pp. 446-451. ISSN 0028-0836 (Public Dataset)
Huang, Longwen, Kebschull, Justus M, Fürth, Daniel, Musall, Simon, Kaufman, Matthew T, Churchland, Anne K, Zador, Anthony M (July 2020) BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals. Cell, 182 (1). 177-188.e27. ISSN 0092-8674
International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolo, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne K, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Ines, Mainen, Zachary F, Meijer, Guido, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Rossant, Cyrille, Sanders, Joshua, Socha, Karolina, Terry, Rebecca, Urai, Anne E, Vergara, Hernando, Wells, Miles, Wilson, Christian J, Witten, Ilana B, Wool, Lauren E, Zador, Anthony M (May 2021) Standardized and reproducible measurement of decision-making in mice. eLife, 10. ISSN 2050-084X
Jaramillo, S., Zador, A. M. (September 2014) Mice and rats achieve similar levels of performance in an adaptive decision-making task. Frontiers in Systems Neuroscience, 8. Article no.173. ISSN 1662-5137
Joo, Hannah R, Liang, Hexin, Chung, Jason E, Geaghan-Breiner, Charlotte, Fan, Jiang Lan, Nachman, Benjamin P, Kepecs, Adam, Frank, Loren M (August 2021) Rats use memory confidence to guide decisions. Current Biology. ISSN 0960-9822
Juavinett, A. L., Erlich, J. C., Churchland, A. K. (November 2017) Decision-making behaviors: weighing ethology, complexity, and sensorimotor compatibility. Curr Opin Neurobiol, 49. pp. 42-50. ISSN 0959-4388
Kanitscheider, I., Brown, A., Pouget, A., Churchland, A. K. (June 2015) Multisensory decisions provide support for probabilistic number representations. Journal of Neurophysiology, 113 (10). pp. 3490-3498. ISSN 00223077
Kaufman, M. T., Churchland, A. K. (2013) Cognitive neuroscience: Sensory noise drives bad decisions. Nature, 496 (7444). pp. 172-173. ISSN 00280836 (ISSN)
Kaufman, M. T., Churchland, A. K. (November 2016) Many paths from state to state. Nat Neurosci, 19 (12). pp. 1541-1542. ISSN 1546-1726 (Electronic)1097-6256 (Linking)
Kaufman, M. T., Churchland, M. M., Ryu, S. I., Shenoy, K. V. (May 2015) Vacillation, indecision and hesitation in moment-by-moment decoding of monkey motor cortex. Elife, 4. e04677. ISSN 2050-084X (Electronic)2050-084X (Linking)
Kaufman, M. T., Seely, J. S., Sussillo, D., Ryu, S. I., Shenoy, K. V., Churchland, M. M. (August 2016) The Largest Response Component in the Motor Cortex Reflects Movement Timing but Not Movement Type. eNeuro, 3 (4). ISSN 2373-2822 (Electronic)2373-2822 (Linking)
Kepecs, A. (June 2013) The uncertainty of it all. Nature Neuroscience, 16 (6). pp. 660-2. ISSN 1097-6256
Kepecs, A., Mensh, B. D. (December 2015) Emotor control: computations underlying bodily resource allocation, emotions, and confidence. Dialogues Clin Neurosci, 17 (4). pp. 391-401. ISSN 1958-5969 (Electronic)1294-8322 (Linking)
Kiani, R., Churchland, A. K., Shadlen, M. N. (October 2013) Integration of Direction Cues Is Invariant to the Temporal Gap between Them. Journal of Neuroscience, 33 (42). pp. 16483-9. ISSN 1529-2401 (Electronic)0270-6474 (Linking)
Lak, A., Costa, G. M., Romberg, E., Koulakov, A. A., Mainen, Z. F., Kepecs, A. (September 2014) Orbitofrontal Cortex Is Required for Optimal Waiting Based on Decision Confidence. Neuron, 84 (1). pp. 190-201. ISSN 0896-6273
Lak, A., Nomoto, K., Keramati, M., Sakagami, M., Kepecs, A. (March 2017) Midbrain Dopamine Neurons Signal Belief in Choice Accuracy during a Perceptual Decision. Curr Biol, 27 (6). pp. 821-832. ISSN 0960-9822
Lak, A., Hueske, E., Hirokawa, J., Masset, P., Ott, T., Urai, A. E., Donner, T.H., Carandini, M., Tonegawa, S., Uchida, N., Kepecs, A. (April 2020) Reinforcement Biases Subsequent Perceptual Decisions When Confidence Is Low: A Widespread Behavioral Phenomenon. Elife, 9 (e49834). ISSN 2050-084X
Lak, A., Okun, M., Moss, M. M., Gurnani, H., Farrell, K., Wells, M. J., Reddy, C. B., Kepecs, A., Harris, K. D., Carandini, M. (December 2019) Dopaminergic and Prefrontal Basis of Learning from Sensory Confidence and Reward Value. Neuron. ISSN 0896-6273
Lee, Ser Yee, Goh, Brian KP, Sepideh, Gholami, Allen, John C, Merkow, Ryan P, Teo, Jin Yao, Chandra, Deepa, Koh, Ye Xin, Tan, Ek Khoon, Kam, Juinn Haur, Cheow, Peng Chung, Chow, Pierce KH, Ooi, London LPJ, Chung, Alexander YF, D'Angelica, Michael I, Jarnagin, William R, Peter Kingham, T, Chan, Chung Yip (March 2019) Laparoscopic Liver Resection Difficulty Score-a Validation Study. Journal of Gastrointestinal Surgery, 23 (3). pp. 545-555. ISSN 1091-255X
Lee, A. M., Tai, L. H., Zador, A., Wilbrecht, L. (June 2015) Between the primate and 'reptilian' brain: Rodent models demonstrate the role of corticostriatal circuits in decision making. Neuroscience, 296. pp. 66-74. ISSN 0306-4522
Licata, A. M., Kaufman, M. T., Raposo, D., Ryan, M. B., Sheppard, J. P., Churchland, A. K. (May 2017) Posterior parietal cortex guides visual decisions in rats. J Neurosci, 37 (19). pp. 4954-4966. ISSN 0270-6474
Masset, P., Ott, T., Lak, A., Hirokawa, J., Kepecs, A. (June 2020) Behavior- And Modality-General Representation of Confidence in Orbitofrontal Cortex. Cell, 182. ISSN 0092-8674
Musall, S., Kaufman, M. T., Juavinett, A. L., Gluf, S., Churchland, A. K. (October 2019) Single-trial neural dynamics are dominated by richly varied movements. Nat Neurosci, 22 (10). pp. 1677-1686. ISSN 1097-6256
Najafi, F., Churchland, A. K. (October 2018) Perceptual Decision-Making: A Field in the Midst of a Transformation. Neuron, 100 (2). pp. 453-462. ISSN 0896-6273
Najafi, F., Elsayed, G. F., Cao, R., Pnevmatikakis, E., Latham, P. E., Cunningham, J. P., Churchland, A. K. (October 2019) Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning. Neuron, 105 (1). pp. 165-179. ISSN 0896-6273 (Public Dataset)
Odoemene, O., Pisupati, S., Nguyen, H., Churchland, A. K. (October 2018) Visual evidence accumulation guides decision-making in unrestrained mice. J Neurosci, 38 (47). pp. 10143-10155. ISSN 0270-6474 (Public Dataset)
Ott, T., Masset, P., Kepecs, A. (July 2018) The Neurobiology of Confidence: From Beliefs to Neurons. Cold Spring Harb Symp Quant Biol, 83. pp. 9-16. ISSN 0091-7451
Pisupati, S., Chartarifsky, L., Churchland, A. K. (September 2016) Decision Activity in Parietal Cortex - Leader or Follower? Trends Cogn Sci. ISSN 1879-307X (Electronic)1364-6613 (Linking)
Pisupati, Sashank, Chartarifsky-Lynn, Lital, Khanal, Anup, Churchland, Anne K (January 2021) Lapses in perceptual decisions reflect exploration. eLife, 10. pp. 1-27. ISSN 2050-084X
Raposo, D., Sheppard, J. P., Schrater, P. R., Churchland, A. K. (March 2012) Multisensory decision-making in rats and humans. Journal of Neuroscience, 32 (11). pp. 3726-35. ISSN 0270-6474
Raposo, David, Kaufman, Matthew T., Churchland, Anne K. (December 2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience, 17 (12). pp. 1784-1792. ISSN 1546-1726
Roach, James, Churchland, Anne, Engel, Tatiana (2022) Two roles for choice selective inhibition in decision-making circuits. (Submitted)
Romo, R., Hernandez, A., Zainos, A., Lemus, L., Brody, C. D. (November 2002) Neuronal correlates of decision-making in secondary somatosensory cortex. Nature Neuroscience, 5 (11). pp. 1217-1225. ISSN 1097-6256
Saxena, S., Kinsella, I., Musall, S., Kim, S.H., Meszaros, J., Thibodeaux, D.N., Kim, C., Cunningham, J., Hillman, E.M.C., Churchland, A., Paninski, L. (April 2020) Localized Semi-Nonnegative Matrix Factorization (LocaNMF) of Widefield Calcium Imaging Data. PLoS Comput Biol, 16 (4). e1007791. ISSN 1553-734x
Sheppard, J. P., Raposo, D., Churchland, A. K. (2013) Dynamic weighting of multisensory stimuli shapes decision-making in rats and humans. Journal of Vision, 13 (6). ISSN 1534-7362 (Electronic)1534-7362 (Linking)
Stephenson-Jones, M., Kardamakis, A. A., Robertson, B., Grillner, S. (September 2013) Independent circuits in the basal ganglia for the evaluation and selection of actions. Proceedings of the National Academy of Sciences of the United States of America, 110 (38). E3670-E3679. ISSN 0027-8424
The International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolò, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Hausser, Michael, Hofer, Sonja, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Inês, Mainen, Zachary, Meijer, Guido, Miska, Nathaniel, Mrsic-Flogel, Thomas, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Sanders, Josh, Socha, Karolina, Terry, Rebecca, Urai, Anne, Vergara, Hernando, Wells, Miles, Wilson, Christian, Witten, Ilana, Wool, Lauren, Zador, Anthony (January 2020) A standardized and reproducible method to measure decision-making in mice. bioRxiv. (Unpublished)
Zariwala, H. A., Kepecs, A., Uchida, N., Hirokawa, J., Mainen, Z. F. (2013) The Limits of Deliberation in a Perceptual Decision Task. Neuron, 78 (2). pp. 339-51. ISSN 08966273 (ISSN)
Znamenskiy, P., Zador, A. M. (May 2013) Corticostriatal neurons in auditory cortex drive decisions during auditory discrimination. Nature, 497. pp. 482-485. ISSN 1476-4687 (Electronic)0028-0836 (Linking)
de Gee, J.W., Tsetsos, K., Schwabe, L., Urai, A.E., McCormick, D., McGinley, M.J., Donner, T.H. (June 2020) Pupil-linked Phasic Arousal Predicts a Reduction of Choice Bias Across Species and Decision Domains. Elife, 9. e54014. ISSN 2050-084X
Churchland, A. K., Shadlen, M. N. (2007) Decision-Making and Vision. In: The New Encyclopedia of Neuroscience. Elsevier.
Bonda, David, Wulf, Michael, Kepecs, Adam (April 2020) A Functional Circuit for Executive Control. In: Annual Scientific Meeting of the American-Association-of-Neurological-Surgeons (AANS).
Churchland, A. K. (May 2013) Noise in decision making. In: European Science Foundation Exploratory Workshop , May 29th 2013, Sant Fruitós del Bages, Spain. (Unpublished)
Sheppard, J. P., Ryan, M.B., Churchland, A. K. (November 2013) Optogenetic stimulation of visual inputs to posterior parietal cortex biases choice behavior of rats on a multisensory decision task. In: Neuroscience 2013, Nov 9th-13th 2013, San Diego, CA.
Shuvaev, S, Starosta, S, Kvitsiani, D, Kepecs, A, Koulakov, A (January 2020) R-learning in actor-critic model offers a biologically relevant mechanism for sequential decision-making. In: NeurIPS 2020.
Feierstein, C. E. (February 2007) Representation of goals, actions and outcomes in rat orbitofrontal cortex. PhD thesis, Cold Spring Harbor Laboratory.
Krasniak, Christopher (April 2022) Mesoscale imaging, inactivation, and collaboration in a standardized visual decision-making task. PhD thesis, Cold Spring Harbor Laboratory.
Pisupati, Sashank (April 2019) A value-based explanation for lapses in perceptual decisions. PhD thesis, Cold Spring Harbor.
Sanders, Joshua (January 2014) A computational framework for understanding decision confidence. PhD thesis, Cold Spring Harbor Laboratory.
Shen, Luqun (April 2022) Perceptual Categorization and Neural Representations of Vocal Stimuli. PhD thesis, Cold Spring Harbor Laboratory.
Zhang, Anqi (July 2020) Representations in Rodent Primary Visual Cortex During Visual Discrimination. PhD thesis, Cold Spring Harbor.
Churchland, A. K., Bekheet, G., Cascone, B., Chartarifsky, L., Juavinett, A. L., Musall, S., Najafi, F., Pisupati, S., Urai, A. (May 2018) The Churchland birthday data cake. [Image]
Churchland, A. K. (November 2011) Talk from Anne Churchland at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)
Shea, S. D. (November 2011) Talk from Stephen Shea at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)
Najafi, F., Elsayed, G. F., Pnevmatikakis, E., Cunningham, J. P., Churchland, A. K. (2018) Datasets from "Najafi, Farzaneh and Elsayed, Gamaleldin F and Pnevmatikakis, Eftychios and Cunningham, John P and Churchland, Anne K (2018) Inhibitory and excitatory populations in parietal cortex are equally selective for decision outcome in both novices and experts. [Dataset] (In Press)
Odoemene, O., Pisupati, S., Nguyen, H., Churchland, A. K. (January 2020) Dataset from: Visual evidence accumulation guides decision-making in unrestrained mice. [Dataset]
Pisupati, S., Chartarifsky, L., Khanal, A., Churchland, A. K. (February 2020) Dataset from: Lapses in perceptual decisions reflect exploration. [Dataset]
Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Datasets from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]
Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Matlab code for running the PAIRS and Variance Alignment Analyses from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]
Sheppard, J. P., Raposo, D., Churchland, A. K. (August 2013) Tutorial and data for "Sheppard, J. P. and Raposo, D. and Churchland, A. K. (2013) Dynamic weighting of multisensory stimuli shapes decision-making in rats and humans. Journal of Vision, 13 (6).". [Dataset]
![[up]](/style/images/multi_up.png)
Up a level