Items where Subject is "bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > DNA expression > transposable elements"

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Number of items at this level: 45.

A

Athma, P., Grotewold, E., Peterson, T. (1992) Insertional mutagenesis of the maize P gene by intragenic transposition of Ac. Genetics, 131 (1). pp. 199-209. ISSN 0016-6731 (Print)0016-6731 (Linking)

Athma, P., Peterson, T. (1991) Ac induces homologous recombination at the maize P locus. Genetics, 128 (1). pp. 163-73. ISSN 0016-6731 (Print)0016-6731 (Linking)

B

Barkan, A., Martienssen, R. A. (1991) Inactivation of maize transposon Mu suppresses a mutant phenotype by activating an outward-reading promoter near the end of Mu1. Proceedings of the National Academy of Sciences of the United States of America, 88 (8). pp. 3502-3506. ISSN 0027-8424

C

Calarco, J. P., Martienssen, R. A. (2011) Genome reprogramming and small interfering RNA in the Arabidopsis germline. Curr Opin Genet Dev, 21 (2). pp. 134-9. ISSN 1879-0380 (Electronic) 0959-437X (Linking)

Clouston, W. M. (1990) The angiotensinogen gene of Swiss mice is closely linked to a retrovirus-like element. DNA and Cell Biology, 9 (9). pp. 623-630. ISSN 1044-5498

Comfort, N. C. (1995) Two genes, no enzyme: a second look at Barbara McClintock and the 1951 Cold Spring Harbor Symposium. Genetics, 140 (4). pp. 1161-6. ISSN 0016-6731 (Print)

D

Doseff, A., Martienssen, R., Sundaresan, V. (1991) Somatic excision of the Mu1 transposable element of maize. Nucleic Acids Research, 19 (3). pp. 579-584. ISSN 0305-1048

G

Grant, S. G., Jessee, J., Bloom, F. R., Hanahan, D. (1990) Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants. Proc Natl Acad Sci U S A, 87 (12). pp. 4645-9. ISSN 0027-8424 (Print)0027-8424 (Linking)

Grotewold, E., Athma, P., Peterson, T. (1991) A possible hot spot for Ac insertion in the maize P gene. Mol Gen Genet, 230 (1-2). pp. 329-31. ISSN 0026-8925 (Print)0026-8925 (Linking)

H

Hannon, G. J. (2012) Talk from Greg Hannon at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Hicks, J., Strathern, J. N., Klar, A. J. S. (1979) Transposable mating type genes in Saccharomyces cerevisiae. Nature, 282 (5738). pp. 478-483. ISSN 00280836 (ISSN)

J

Jin, Y., Tam, O. H., Paniagua, E., Hammell, M. (2015) TEtranscripts: A package for including transposable elements in differential expression analysis of RNA-seq datasets. Bioinformatics, 31 (22). pp. 3593-3599. ISSN 1367-4811 (Electronic)1367-4803 (Linking)

K

Kamp, D., Chow, L. T., Broker, T. R., Kwoh, D., Zipser, D., Kahmann, R. (1979) Site-specific recombination in phage mu. Cold Spring Harb Symp Quant Biol, 43 (2). pp. 1159-67. ISSN 0091-7451 (Print)0091-7451 (Linking)

Krug, L. (2016) The Role of Transposable Elements in TDP-43-Mediated Neurodegeneration. PhD thesis, Cold Spring Harbor Laboratory.

Krug, L., Chatterjee, N., Borges-Monroy, R., Hearn, S., Liao, W. W., Morrill, K., Prazak, L., Rozhkov, N., Theodorou, D., Hammell, M., Dubnau, J. (2017) Retrotransposon activation contributes to neurodegeneration in a Drosophila TDP-43 model of ALS. PLoS Genet, 13 (3). e1006635. ISSN 1553-7390

Kurtz, S., Narechania, A., Stein, J. C., Ware, D. H. (2008) A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics, 9. p. 517.

L

Li, W., Prazak, L., Chatterjee, N., Gruninger, S., Krug, L., Theodorou, D., Dubnau, J. (2013) Activation of transposable elements during aging and neuronal decline in Drosophila. Nature Neuroscience, 16. pp. 529-531. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Lister, C., Jackson, D., Martin, C. (1993) Transposon-induced inversion in Antirrhinum modifies nivea gene expression to give a novel flower color pattern under the control of cycloidearadialis. Plant Cell, 5 (11). pp. 1541-53. ISSN 1040-4651 (Print)1040-4651

M

Martienssen, R., Barkan, A., Taylor, W. C., Freeling, M. (1990) Somatically heritable switches in the DNA modification of Mu transposable elements monitored with a suppressible mutant in maize. Genes and Development, 4 (3). pp. 331-343. ISSN 08909369 (ISSN)

Martienssen, R. A. (1996) Epigenetic Silencing of Mu Transposable Elements in Maize. In: Epigenetic Mechanisms of Gene Regulation. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., p. 593. ISBN 0270-1847

Martienssen, R. A. (2008) Great leap forward? Transposable elements, small interfering RNA and adaptive Lamarckian evolution. New Phytologist, 179 (3). pp. 570-572. ISSN 0028-646X

McClintock, Barbara (1980) Modified gene expressions induced by transposable elements. In: Mobilization and reassembly of genetic information: Proceedings of the Miami Winter Symposium, January, 1980. Academic Press, New York, pp. 11-19.

McClintock, Barbara (1955) Transposition sequences of Ac. Maize Genetics Cooperation News Letter, 29. p. 16.

O

Oh, S. A., Park, S. K., Jang, I., Howden, R., Moore, J. M., Grossniklaus, U., Twell, D. (2003) halfman, an Arabidopsis male gametophytic mutant associated with a 150 kb chromosomal deletion adjacent to an introduced Ds transposable element. Sexual Plant Reproduction, 16 (2). pp. 99-102. ISSN 0934-0882

P

Peterson, T. (1990) Intragenic transposition of Ac generates a new allele of the maize P gene. Genetics, 126 (2). pp. 469-76. ISSN 0016-6731 (Print)0016-6731 (Linking)

Pfeifer, F., Betlach, M., Martienssen, R., Friedman, J., Boyer, H. W. (1983) Transposable elements of halobacterium-halobium. Molecular & General Genetics, 191 (2). pp. 182-188. ISSN 0026-8925

Q

Quadrana, L., Bortolini Silveira, A., Mayhew, G. F., LeBlanc, C., Martienssen, R. A., Jeddeloh, J. A., Colot, V. (2016) The Arabidopsis thaliana mobilome and its impact at the species level. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

R

Rabinowicz, P. D. (2000) Are obese plant genomes on a diet? Genome Research, 10 (7). pp. 893-894. ISSN 1088-9051

Rabinowicz, P. D., Grotewold, E. (2000) A novel reverse-genetic approach (SIMF) identifies Mutator insertions in new Myb genes. Planta, 211 (6). pp. 887-893. ISSN 0032-0935

Rangan, P., Malone, Colin D. , Navarro, C., Newbold, S. P, Hayes, P. S, Sachidanandam, R., Hannon, G. J., Lehmann, R. (2011) piRNA Production Requires Heterochromatin Formation in Drosophila. Current Biology, 21 (16). pp. 1373-1379. ISSN 0960-9822

Reilly, M. T., Faulkner, G. J., Dubnau, J., Ponomarev, I., Gage, F. H. (2013) The role of transposable elements in health and diseases of the central nervous system. Journal of Neuroscience, 33 (45). pp. 17577-86. ISSN 0270-6474

S

Sabot, F., Picault, N., Elbaidouri, M., Llauro, C., Chaparro, C., Piegu, B., Roulin, A., Guiderdoni, E., Delabastide, M., McCombie, W. R., Panaud, O. (2011) Transpositional landscape of rice genome revealed by Paired-End Mapping of high-throughput resequencing data. Plant Journal, 66 (2). pp. 241-246. ISSN 0960-7412

Settles, A. M., Baron, A., Barkan, A., Martienssen, R. A. (2001) Duplication and suppression of chloroplast protein translocation genes in maize. Genetics, 157 (1). pp. 349-360. ISSN 0016-6731

Singer, T., Yordan, C., Martienssen, R. A. (2001) Robertson's Mutator transposons in A-thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes & Development, 15 (5). pp. 591-602. ISSN 0890-9369

Singh, P. K., Bourque, G., Craig, N. L., Dubnau, J. T., Feschotte, C., Flasch, D. A., Gunderson, K. L., Malik, H. S., Moran, J. V., Peters, J. E., Slotkin, R. K., Levin, H. L. (2014) Mobile genetic elements and genome evolution 2014. Mobile DNA, 5. ISSN 1759-8753

Slotkin, R. K., Vaughn, M., Borges, F., Tanurdzic, M., Becker, J. D., Feijo, J. A., Martienssen, R. A. (2009) Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell, 136 (3). pp. 461-72. ISSN 1097-4172 (Electronic)0092-8674 (Linking)

Slotkin, R. Keith, Martienssen, Robert (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet, 8 (4). pp. 272-85. ISSN 1471-0056 (Print)

Strathern, J. N., Spatola, E., McGill, C., Hicks, J. B. (1980) Structure and organization of transposable mating type cassettes in Saccharomyces yeasts. Proceedings of the National Academy of Sciences of the United States of America, 77 (5 I). pp. 2839-2843. ISSN 00278424 (ISSN)

Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J. D. G., Dean, C., Ma, H., Martienssen, R. (1995) Patterns of Gene-Action in Plant Development Revealed by Enhancer Trap and Gene Trap Transposable Elements. Genes & development, 9 (14). pp. 1797-1810. ISSN 0890-9369

Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J. D. G., Dean, C., Ma, H., Martienssen, R. (1995) Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes & Development, 9 (14). pp. 1797-1810. ISSN 0890-9369

U

Underwood, C. J., Martienssen, R. A. (2015) Argonautes team up to silence transposable elements in Arabidopsis. Embo Journal, 34 (5). pp. 579-580. ISSN 0261-4189

Underwood, Charles J., Henderson, Ian R., Martienssen, Robert A. (2017) Genetic and epigenetic variation of transposable elements in Arabidopsis. Current Opinion in Plant Biology, 36. pp. 135-141. ISSN 1369-5266

V

Vongs, A., Kakutani, T., Martienssen, R. A., Richards, E. J. (1993) Arabidopsis thaliana DNA methylation mutants. Science, 260 (5116). pp. 1926-1928. ISSN 0036-8075

X

Xie, W. W., Liang, C. Z., Birchler, J. A. (2011) Inhibition of RNA Interference and Modulation of Transposable Element Expression by Cell Death in Drosophila. Genetics, 188 (4). pp. 823-834. ISSN 0016-6731

Z

Zhao, Z. Y., Sundaresan, V. (1991) Binding sites for maize nuclear proteins in the terminal inverted repeats of the Mu1 transposable element. Mol Gen Genet, 229 (1). pp. 17-26. ISSN 0026-8925 (Print)0026-8925 (Linking)

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