Items where Subject is "phylogenetic tree annotation"

Paper

Harrison, Peter W, Amode, M Ridwan, Austine-Orimoloye, Olanrewaju, Azov, Andrey G, Barba, Matthieu, Barnes, If, Becker, Arne, Bennett, Ruth, Berry, Andrew, Bhai, Jyothish, Bhurji, Simarpreet Kaur, Boddu, Sanjay, Branco Lins, Paulo R, Brooks, Lucy, Ramaraju, Shashank Budhanuru, Campbell, Lahcen I, Martinez, Manuel Carbajo, Charkhchi, Mehrnaz, Chougule, Kapeel, Cockburn, Alexander, Davidson, Claire, De Silva, Nishadi H, Dodiya, Kamalkumar, Donaldson, Sarah, El Houdaigui, Bilal, Naboulsi, Tamara El, Fatima, Reham, Giron, Carlos Garcia, Genez, Thiago, Grigoriadis, Dionysios, Ghattaoraya, Gurpreet S, Martinez, Jose Gonzalez, Gurbich, Tatiana A, Hardy, Matthew, Hollis, Zoe, Hourlier, Thibaut, Hunt, Toby, Kay, Mike, Kaykala, Vinay, Le, Tuan, Lemos, Diana, Lodha, Disha, Marques-Coelho, Diego, Maslen, Gareth, Merino, Gabriela Alejandra, Mirabueno, Louisse Paola, Mushtaq, Aleena, Hossain, Syed Nakib, Ogeh, Denye N, Sakthivel, Manoj Pandian, Parker, Anne, Perry, Malcolm, Piližota, Ivana, Poppleton, Daniel, Prosovetskaia, Irina, Raj, Shriya, Pérez-Silva, José G, Salam, Ahamed Imran Abdul, Saraf, Shradha, Saraiva-Agostinho, Nuno, Sheppard, Dan, Sinha, Swati, Sipos, Botond, Sitnik, Vasily, Stark, William, Steed, Emily, Suner, Marie-Marthe, Surapaneni, Likhitha, Sutinen, Kyösti, Tricomi, Francesca Floriana, Urbina-Gómez, David, Veidenberg, Andres, Walsh, Thomas A, Ware, Doreen, Wass, Elizabeth, Willhoft, Natalie L, Allen, Jamie, Alvarez-Jarreta, Jorge, Chakiachvili, Marc, Flint, Bethany, Giorgetti, Stefano, Haggerty, Leanne, Ilsley, Garth R, Keatley, Jon, Loveland, Jane E, Moore, Benjamin, Mudge, Jonathan M, Naamati, Guy, Tate, John, Trevanion, Stephen J, Winterbottom, Andrea, Frankish, Adam, Hunt, Sarah E, Cunningham, Fiona, Dyer, Sarah, Finn, Robert D, Martin, Fergal J, Yates, Andrew D (November 2023) Ensembl 2024. Nucleic Acids Research. gkad1049. ISSN 0305-1048

Hladish, T., Gopalan, V., Liang, C., Qiu, W., Yang, P., Stoltzfus, A. (June 2007) Bio :: NEXUS: a Perl API for the NEXUS format for comparative biological data. Bmc Bioinformatics, 8. p. 191. ISSN 1471-2105

Ilic, K., Kellogg, E. A., Jaiswal, P., Zapata, F., Stevens, P. F., Vincent, L. P., Avraham, S., Reiser, L., Pujar, A., Sachs, M. M., Whitman, N. T., McCouch, S. R., Schaeffer, M. L., Ware, D. H., Stein, L. D., Rhee, S. Y. (February 2007) The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiology, 143 (2). pp. 587-599. ISSN 0032-0889

Jojic, V., Jojic, N., Meek, C., Geiger, D., Siepel, A., Haussler, D., Heckerman, D. (August 2004) Efficient approximations for learning phylogenetic HMM models from data. Bioinformatics, 20 Sup. i161-8. ISSN 1367-4803

Ma, Y., Mathews, M. B. (August 1996) Structure, function, and evolution of adenovirus-associated RNA: a phylogenetic approach. Journal of Virology, 70 (8). pp. 5083-99. ISSN 0022-538X

Pan, X. K., Stein, L. D., Brendel, V. (September 2005) SynBrowse: a synteny browser for comparative sequence analysis. Bioinformatics, 21 (17). pp. 3461-3468. ISSN 1367-4803

Pang, A., Smith, A. D., Nuin, P. A. S., Tillier, E. R. (September 2005) SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution. BMC Bioinformatics, 6. ISSN 1471-2105

Siepel, A., Haussler, D. (2003) Combining phylogenetic and hidden Markov models in biosequence analysis. Proceedings of the seventh annual international conference on Research in computational molecular biology. pp. 277-286.

White, J. R., Navlakha, S., Nagarajan, N., Ghodsi, M. R., Kingsford, C., Pop, M. (March 2010) Alignment and clustering of phylogenetic markers--implications for microbial diversity studies. BMC Bioinformatics, 11 (3). p. 152. ISSN 1471-2105

Book Section

Howarth, Dianella G, Dunn, Matthew P (2016) Phylogenetic Approach to Studying Developmental Evolution: A Model Clade Approach. In: Encyclopedia of Evolutionary Biology. Academic Press, Waltham, Massachusetts, USA, pp. 246-253.