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Gunnery, S., Ma, Y., Mathews, M. B. (February 1999) Termination sequence requirements vary among genes transcribed by RNA polymerase III. Journal of Molecular Biology, 286 (3). pp. 745-57. ISSN 0022-2836 (Print)

Ma, Y., Mathews, M. B. (September 1996) Secondary and tertiary structure in the central domain of adenovirus type 2 VA RNA I. Rna, 2 (9). pp. 937-51. ISSN 1355-8382 (Print)

Ma, Y., Mathews, M. B. (August 1996) Structure, function, and evolution of adenovirus-associated RNA: a phylogenetic approach. Journal of Virology, 70 (8). pp. 5083-99. ISSN 0022-538X

Schmedt, C., Green, S. R., Manche, L., Taylor, D. R., Ma, Y., Mathews, M. B. (May 1995) Functional characterization of the RNA-binding domain and motif of the double-stranded RNA-dependent protein kinase DAI (PKR). Journal of Molecular Biology, 249 (1). pp. 29-44. ISSN 0022-2836

Ma, Y., Mathews, M. B. (November 1993) Comparative analysis of the structure and function of adenovirus virus-associated RNAs. J Virol, 67 (11). pp. 6605-17. ISSN 0022-538X (Print)