Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation.

Hu, Haifei, Scheben, Armin, Verpaalen, Brent, Tirnaz, Soodeh, Bayer, Philipp E, Hodel, Richard GJ, Batley, Jacqueline, Soltis, Douglas E, Soltis, Pamela S, Edwards, David (July 2021) Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation. New Phytologist. ISSN 0028-646X

[img] PDF
2021.Hu.Amborella.pdf
Available under License Creative Commons Attribution Non-commercial No Derivatives.

Download (930kB)
URL: https://www.ncbi.nlm.nih.gov/pubmed/34328223
DOI: 10.1111/nph.17658

Abstract

Amborella trichopoda (Amborellaceae) is the single living sister species of all other extant flowering plants and only occurs in rain forest habitats on the remote island of New Caledonia. These features make Amborella an important species in which to study genetic variation, including gene presence/absence variants (PAVs). Here, we apply the reference genome based iterative mapping and assembly strategy (Bayer et al., 2020) to assess gene diversity across ten diverse individuals.

Item Type: Paper
Subjects: organism description > plant behavior
organism description > plant
CSHL Authors:
Communities: CSHL labs > Siepel lab
SWORD Depositor: CSHL Elements
Depositing User: CSHL Elements
Date: 30 July 2021
Date Deposited: 25 Aug 2021 14:27
Last Modified: 25 Aug 2021 14:27
URI: https://repository.cshl.edu/id/eprint/40331

Actions (login required)

Administrator's edit/view item Administrator's edit/view item
CSHL HomeAbout CSHLResearchEducationNews & FeaturesCampus & Public EventsCareersGiving