Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation.

Hu, Haifei, Scheben, Armin, Verpaalen, Brent, Tirnaz, Soodeh, Bayer, Philipp E, Hodel, Richard GJ, Batley, Jacqueline, Soltis, Douglas E, Soltis, Pamela S, Edwards, David (July 2021) Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation. New Phytologist. ISSN 0028-646X

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URL: https://www.ncbi.nlm.nih.gov/pubmed/34328223

DOI: 10.1111/nph.17658

Abstract

Amborella trichopoda (Amborellaceae) is the single living sister species of all other extant flowering plants and only occurs in rain forest habitats on the remote island of New Caledonia. These features make Amborella an important species in which to study genetic variation, including gene presence/absence variants (PAVs). Here, we apply the reference genome based iterative mapping and assembly strategy (Bayer et al., 2020) to assess gene diversity across ten diverse individuals.

Item Type:	Paper
Subjects:	organism description > plant behavior organism description > plant
CSHL Authors:	Scheben, Armin
Communities:	CSHL labs > Siepel lab
SWORD Depositor:	CSHL Elements
Depositing User:	CSHL Elements
Date:	30 July 2021
Date Deposited:	25 Aug 2021 14:27
Last Modified:	27 Nov 2023 16:38
PMCID:	PMC9292397
URI:	https://repository.cshl.edu/id/eprint/40331

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