Browse by CSHL Author

Paper

Prabakar, Rishvanth K, Chapin, Sarah R, Lin, Yong, Staklinski, Stephen J, Netz, Deena M, Lapine, Madison E, Pruss, Dominic, Cvetanovic, Todor, Carcy, Salome L, Torres, Joshua, Grosh, Alexander, Kiedrowski, Alexandra J, Pass, Harvey I, Mosca, Ralph, Regan, Claire, Preall, Jonathan, Siepel, Adam, Meyer, Hannah V (November 2026) Gene regulatory logic underlying the differentiation of mixed lineages in human thymic epithelial cells. bioRxiv. ISSN 2692-8205 (Submitted)

Meyer, Hannah V, Dasgupta, Sanjoy, Banerjee, Amitava, Lin, Yong, Prabakar, Rishvanth K, Chapin, Sarah R, Kingsford, Carl, Navlakha, Saket (August 2026) Central T cell tolerance from sparse peptide sampling. Science Advances, 12 (34). eaeg8240. ISSN 2375-2548 (Public Dataset)

Meyer, Hannah V, Dasgupta, Sanjoy, Banerjee, Amitava, Lin, Yong, Prabakar, Rishvanth K, Chapin, Sarah R, Kingsford, Carl, Navlakha, Saket (December 2025) Sparse, random sampling is sufficient for central tolerance. bioRxiv. ISSN 2692-8205 (Submitted)

Banerjee, Amitava, Pattinson, David J, Wincek, Cornelia L, Bunk, Paul, Axhemi, Armend, Chapin, Sarah R, Navlakha, Saket, Meyer, Hannah V (July 2025) T cell receptor cross-reactivity prediction improved by a comprehensive mutational scan database. Cell Systems. p. 101345. ISSN 2405-4720 (Public Dataset)

Banerjee, Amitava, Pattinson, David J, Wincek, Cornelia L, Bunk, Paul, Chapin, Sarah R, Navlakha, Saket, Meyer, Hannah V (January 2024) BATMAN: Improved T cell receptor cross-reactivity prediction benchmarked on a comprehensive mutational scan database. bioRxiv. (Submitted)

Kovaleva, Vasilisa A, Pattinson, David J, Barton, Carl, Chapin, Sarah R, Minervina, Anastasia A, Richards, Katherine A, Sant, Andrea J, Thomas, Paul G, Pogorelyy, Mikhail V, Meyer, Hannah V (November 2023) copepodTCR: Identification of Antigen-Specific T Cell Receptors with combinatorial peptide pooling. bioRxiv. (Submitted)

Conference or Workshop Item

Banerjee, Amitava, Pattinson, David, Wincek, Cornelia, Bunk, Paul, Chapin, Sarah, Navlakha, Saket, Meyer, Hannah (May 2024) BATMAN: Improved T cell receptor cross-reactivity prediction benchmarked on a comprehensive mutational scan database. In: UNSPECIFIED.