Snakeobjects: an object-oriented workflow management system

Yamrom, Boris, Lee, Yoon-ha, Marks, Steven, Chorbadjiev, Lubomir, Meyer, Hannah V, Iossifov, Ivan (December 2022) Snakeobjects: an object-oriented workflow management system. bioRxiv. (Submitted)

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Abstract

Snakemake is one of the most popular workflow management systems, particularly in biological sciences. Snakemake workflows are highly portable, scalable, and transparent. Moreover, they enable the painless reproduction of published results and adaption to similar data processing and analysis projects. Here we present Snakeobjects, an extension of Snakemake that considerably simplifies the development of workflows and improves their readability and adaptability while preserving all the benefits of Snakemake that ensure the large and growing community of its users.

Item Type:	Paper
Subjects:	bioinformatics
CSHL Authors:	Yamrom, Boris Lee, Yoon-Ha Meyer, Hannah V. Iossifov, Ivan Marks, Stephen
Communities:	CSHL labs > Iossifov lab CSHL labs > Meyer Lab
SWORD Depositor:	CSHL Elements
Depositing User:	CSHL Elements
Date:	12 December 2022
Date Deposited:	20 Dec 2023 20:42
Last Modified:	20 Dec 2023 20:42
Related URLs:	Publisher
URI:	https://repository.cshl.edu/id/eprint/41356

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