Yamrom, Boris, Lee, Yoon-ha, Marks, Steven, Chorbadjiev, Lubomir, Meyer, Hannah V, Iossifov, Ivan (December 2022) Snakeobjects: an object-oriented workflow management system. bioRxiv. (Submitted)
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Abstract
Snakemake is one of the most popular workflow management systems, particularly in biological sciences. Snakemake workflows are highly portable, scalable, and transparent. Moreover, they enable the painless reproduction of published results and adaption to similar data processing and analysis projects. Here we present Snakeobjects, an extension of Snakemake that considerably simplifies the development of workflows and improves their readability and adaptability while preserving all the benefits of Snakemake that ensure the large and growing community of its users.
| Item Type: | Paper |
|---|---|
| Subjects: | bioinformatics |
| CSHL Authors: | |
| Communities: | CSHL labs > Iossifov lab CSHL labs > Meyer Lab |
| SWORD Depositor: | CSHL Elements |
| Depositing User: | CSHL Elements |
| Date: | 12 December 2022 |
| Date Deposited: | 20 Dec 2023 20:42 |
| Last Modified: | 20 Dec 2023 20:42 |
| Related URLs: | |
| URI: | https://repository.cshl.edu/id/eprint/41356 |
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