Ribbon: Visualizing complex genome alignments and structural variation

Nattestad, Maria, Chin, Chen-Shan, Schatz, Michael (October 2016) Ribbon: Visualizing complex genome alignments and structural variation. bioRxiv. (Unpublished)

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Abstract

<h4>To the Editor</h4> Visualization has played an extremely important role in the current genomic revolution to inspect and understand variants, expression patterns, evolutionary changes, and a number of other relationships 1–3 . However, most of the information in read-to-reference or genome-genome alignments is lost for structural variations in the one-dimensional views of most genome browsers showing only reference coordinates. Instead, structural variations captured by long reads or assembled contigs often need more context to understand, including alignments and other genomic information from multiple chromosomes.

Item Type:	Paper
Subjects:	bioinformatics > computational biology bioinformatics > genomics and proteomics > genetics & nucleic acid processing > genomes
CSHL Authors:	Nattestad, Maria Schatz, Michael C.
Communities:	CSHL labs > Schatz lab School of Biological Sciences > Publications
SWORD Depositor:	CSHL Elements
Depositing User:	CSHL Elements
Date:	20 October 2016
Date Deposited:	26 May 2021 13:47
Last Modified:	29 Feb 2024 21:26
URI:	https://repository.cshl.edu/id/eprint/40164

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