Harger, C., Skupski, M., Allen, E., Clark, C., Crowley, D., Dickinson, E., Easley, D., Espinosa-Lujan, A., Farmer, A., Fields, C., Flores, L., Harris, L., Keen, G., Manning, M., McLeod, M., O'Neill, J., Pumilia, M., Reinert, R., Rider, D., Rohrlich, J., Romero, Y., Schwertfeger, J., Seluja, G., Siepel, A., Schad, P. A. (January 1997) The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes. Nucleic Acids Res, 25 (1). pp. 18-23. ISSN 0305-1048 (Print)0305-1048
Preview |
PDF (Paper)
Siepel Nucleic Acid Res 1997.pdf - Published Version Download (347kB) | Preview |
Abstract
The Genome Sequence DataBase (GSDB) has completed its conversion to an improved relational database. The new database, GSDB 1.0, is fully operational and publicly available. Data contributions, including both original sequence submissions and community annotation, are being accomplished through the use of a graphical client-server interface tool, the GSDB Annotator, and via GIO (GSDB Input/Output) files. Data retrieval services are being provided through a new Web Query Tool and direct SQL. All methods of data contribution and data retrieval fully support the new data types that have been incorporated into GSDB, including discontiguous sequences, multiple sequence alignments, and community annotation.
| Item Type: | Paper |
|---|---|
| Uncontrolled Keywords: | Animals *Base Sequence *Databases, Factual Humans Private Sector Software |
| Subjects: | bioinformatics bioinformatics > genomics and proteomics > databases bioinformatics > genomics and proteomics bioinformatics > genomics and proteomics > genetics & nucleic acid processing > genomes |
| CSHL Authors: | |
| Communities: | CSHL labs > Siepel lab |
| Depositing User: | Matt Covey |
| Date: | 1 January 1997 |
| Date Deposited: | 14 Jan 2015 17:52 |
| Last Modified: | 08 Nov 2017 15:55 |
| PMCID: | PMC146367 |
| Related URLs: | |
| URI: | https://repository.cshl.edu/id/eprint/31067 |
Actions (login required)
 |
Administrator's edit/view item |