Liu, H., Sachidanandam, R., Stein, L. (December 2001) Comparative genomics between rice and Arabidopsis shows scant collinearity in gene order. Genome Research, 11 (12). pp. 2020-2026. ISSN 1088-9051
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Abstract
We have investigated possible collinearity between the genomes of rice and Arabidopsis by comparing 126 annotated and mapped rice BAC Sequences (similar to 20 Mb of sequence) with the annotated and complete Arabidopsis genome (similar to 115 Mb). Although we were able to identify several re.-ions in which gene order is preserved, they are relatively small, and are interrupted by noncollinear genes. Computer simulation showed that these microscale collinearities are above the expectation for a random process. Oil the other hand, the order of exons within homolo.-ous.-enes (<2.5 kb) was preserved, as expected.
| Item Type: | Paper |
|---|---|
| Uncontrolled Keywords: | ORGANIZATION THALIANA SYNTENY CHROMOSOME-4 COLINEARITY MAIZE DNA |
| Subjects: | organism description > plant > Arabidopsis Investigative techniques and equipment > comparative genomic hybridization Investigative techniques and equipment > assays > comparative genomic hybridization bioinformatics > genomics and proteomics organism description > plant > rice |
| CSHL Authors: | |
| Communities: | CSHL labs > Stein lab |
| Depositing User: | Matt Covey |
| Date: | December 2001 |
| Date Deposited: | 17 Jan 2014 21:35 |
| Last Modified: | 17 Jan 2014 21:35 |
| PMCID: | PMC311223 |
| Related URLs: | |
| URI: | https://repository.cshl.edu/id/eprint/29264 |
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