Construction, alignment and analysis of 12 framework physical maps that represent the 10 genome types of the genus Oryza

Kim, H. R., Hurwitz, B. L., Yu, Y., Collura, K., Gill, N., SanMiguel, P., Mullikin, J. C., Maher, C., Nelson, W., Wissotski, M., Braidotti, M., Kudrna, D., Goigochia, J. L., Stein, L. D., Ware, D. H., Jackson, S., Soderlund, C., Wing, R. (February 2008) Construction, alignment and analysis of 12 framework physical maps that represent the 10 genome types of the genus Oryza. Genome Biology, 9 (2). R45. ISSN 1465-6906

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URL: https://www.ncbi.nlm.nih.gov/pubmed/18304353

DOI: 10.1186/gb-2008-9-2-r45

Abstract

We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end sequence was analyzed for repeat, SSR, miRNA and single nucleotide variation providing the most extensive analysis of Oryza sequence to date.

Item Type:	Paper
Subjects:	bioinformatics > genomics and proteomics > Mapping and Rendering organism description > plant > Oryza bioinformatics > genomics and proteomics > annotation > sequence annotation bioinformatics > genomics and proteomics > Mapping and Rendering > Sequence Rendering
CSHL Authors:	Stein, Lincoln D. Ware, Doreen H.
Communities:	CSHL labs > Stein lab CSHL labs > Ware lab
Depositing User:	CSHL Librarian
Date:	27 February 2008
Date Deposited:	03 Apr 2012 19:16
Last Modified:	23 Feb 2017 16:57
PMCID:	PMC2374706
Related URLs:	Publisher
URI:	https://repository.cshl.edu/id/eprint/25927

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