Long noncoding RNAs: functional surprises from the RNA world

Wilusz, J. E., Sunwoo, H., Spector, D. L. (July 2009) Long noncoding RNAs: functional surprises from the RNA world. Genes & Development, 23 (13). pp. 1494-1504. ISSN 0890-9369

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Abstract

Most of the eukaryotic genome is transcribed, yielding a complex network of transcripts that includes tens of thousands of long noncoding RNAs with little or no protein-coding capacity. Although the vast majority of long noncoding RNAs have yet to be characterized thoroughly, many of these transcripts are unlikely to represent transcriptional noise as a significant number have been shown to exhibit cell type-specific expression, localization to subcellular compartments, and association with human diseases. Here, we highlight recent efforts that have identified a myriad of molecular functions for long noncoding RNAs. In some cases, it appears that simply the act of noncoding RNA transcription is sufficient to positively or negatively affect the expression of nearby genes. However, in many cases, the long noncoding RNAs themselves serve key regulatory roles that were assumed previously to be reserved for proteins, such as regulating the activity or localization of proteins and serving as organizational frameworks of subcellular structures. In addition, many long noncoding RNAs are processed to yield small RNAs or, conversely, modulate how other RNAs are processed. It is thus becoming increasingly clear that long noncoding RNAs can function via numerous paradigms and are key regulatory molecules in the cell.

Item Type:	Paper
Uncontrolled Keywords:	ncRNA transcriptome gene expression transcriptional regulation small RNAs structural RNAs
Subjects:	bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > transcription bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > ncRNA
CSHL Authors:	Spector, David L. Sunwoo, Hongjae Wilusz, Jeremy E.
Communities:	CSHL labs > Spector lab School of Biological Sciences > Publications
Depositing User:	Brian Soldo
Date:	1 July 2009
Date Deposited:	30 Mar 2012 22:43
Last Modified:	28 Jan 2015 16:01
PMCID:	PMC3152381
Related URLs:	Publisher
URI:	https://repository.cshl.edu/id/eprint/25777

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