Items where Subject is "bioinformatics > computational biology > algorithms"

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Number of items at this level: 33.

B

Belkin, M., Hsu, D., Mitra, P. P. (December 2018) Overfitting or perfect fitting? Risk bounds for classification and regression rules that interpolate. In: 32nd Conference on Neural Information Processing Systems, NeurIPS 2018, Montreal, Canada.

C

Chandrasekhar, A., Gordon, D. M., Navlakha, S. (June 2018) A distributed algorithm to maintain and repair the trail networks of arboreal ants. Sci Rep, 8 (1). p. 9297. ISSN 2045-2322 (Public Dataset)

Chang, W. I., Lampe, J. (1992) Theoretical and Empirical Comparisons of Approximate String Matching Algorithms. Proceedings of the Third Annual Symposium on Combinatorial Pattern Matching, 644. pp. 175-184. ISSN 0302-9743

D

Dasgupta, S., Stevens, C. F., Navlakha, S. (November 2017) A neural algorithm for a fundamental computing problem. Science, 358 (6364). pp. 793-796. ISSN 0036-8075 (Public Dataset)

Duggal, Geet, Navlakha, Saket, Girvan, Michelle, Kingsford, Carl (July 2010) Uncovering Many Views of Biological Networks Using Ensembles of Near-Optimal Partitions. MultiClust: 1st International Workshop on Discovering, Summarizing and Using Multiple ClusteringsHeld in Conjunction with KDD-2019.

H

Haas, B. J., Dobin, A., Li, B., Stransky, N., Pochet, N., Regev, A. (October 2019) Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods. Genome Biol, 20 (1). p. 213. ISSN 1474-7596

K

Krauthammer, M., Kra, P., Iossifov, I., Gomez, S. M., Hripcsak, G., Hatzivassiloglou, V., Friedman, C., Rzhetsky, A. (2002) Of truth and pathways: chasing bits of information through myriads of articles. Bioinformatics, 18 Sup. S249-57. ISSN 1367-4803 (Print)1367-4803 (Linking)

M

Marr, T. G., Yan, X., Yu, Q. (1992) Genomic mapping by single copy landmark detection: a predictive model with a discrete mathematical approach. Mamm Genome, 3 (11). pp. 644-9. ISSN 0938-8990 (Print)0938-8990 (Linking)

Mitra, P. P. (November 2018) Fast convergence for stochastic and distributed gradient descent in the interpolation limit. European Signal Processing Conference, EUSIPCO, pp. 1890-1894. ISBN 22195491 (ISSN); 9789082797015 (ISBN)

N

Navlakha, S., Ahammad, P., Myers, E. W. (October 2013) Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging. BMC Bioinformatics, 14. p. 294. ISSN 1471-2105

Navlakha, S., Bar-Joseph, Z. (November 2011) Algorithms in nature: the convergence of systems biology and computational thinking. Mol Syst Biol, 7. p. 546. ISSN 1744-4292

Navlakha, S., Bar-Joseph, Z. (January 2015) Distributed information processing in biological and computational systems. Communications of the ACM, 58 (1). pp. 94-102. ISSN 00010782 (ISSN)

Navlakha, S., Bar-Joseph, Z., Barth, A. L. (January 2018) Network Design and the Brain. Trends Cogn Sci, 22 (1). pp. 64-78. ISSN 1364-6613

Navlakha, S., Barth, A. L., Bar-Joseph, Z. (July 2015) Decreasing-Rate Pruning Optimizes the Construction of Efficient and Robust Distributed Networks. PLoS Comput Biol, 11 (7). e1004347. ISSN 1553-734x

Navlakha, S., Faloutsos, C., Bar-Joseph, Z. (September 2015) MassExodus: modeling evolving networks in harsh environments. Data Mining and Knowledge Discovery, 29 (5). pp. 1211-1232. ISSN 13845810 (ISSN)

Navlakha, S., Gitter, A., Bar-Joseph, Z. (August 2012) A network-based approach for predicting missing pathway interactions. PLoS Comput Biol, 8 (8). e1002640. ISSN 1553-734x

Navlakha, S., He, X., Faloutsos, C., Bar-Joseph, Z. (July 2014) Topological properties of robust biological and computational networks. J R Soc Interface, 11 (96). p. 20140283. ISSN 1742-5662

Navlakha, S., Kingsford, C. (November 2010) Exploring biological network dynamics with ensembles of graph partitions. Pac Symp Biocomput. pp. 166-177. ISSN 2335-6928

Navlakha, S., Kingsford, C. (April 2011) Network archaeology: uncovering ancient networks from present-day interactions. PLoS Comput Biol, 7 (4). e1001119. ISSN 1553-734x (Public Dataset)

Navlakha, S., Kingsford, C. (April 2010) The power of protein interaction networks for associating genes with diseases. Bioinformatics, 26 (8). pp. 1057-63. ISSN 1367-4803 (Public Dataset)

Navlakha, S., Rastogi, R., Shrivastava, N. (June 2008) Graph summarization with bounded error. ACM, 419-431; Art no. 1376661. ISBN 07308078 (ISSN); 9781605581026 (ISBN)

Navlakha, S., Schatz, M. C., Kingsford, C. (February 2009) Revealing biological modules via graph summarization. J Comput Biol, 16 (2). pp. 253-64. ISSN 1066-5277

Navlakha, S., White, J., Nagarajan, N., Pop, M., Kingsford, C. (May 2009) Finding biologically accurate clusterings in hierarchical tree decompositions using the variation of information. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 5541 L . Springer, pp. 400-417. ISBN 03029743 (ISSN); 9783642020070 (ISBN)

P

Patro, R., Sefer, E., Malin, J., Marçais, G., Navlakha, S., Kingsford, C. (September 2012) Parsimonious reconstruction of network evolution. Algorithms for Molecular Biology, 7 (25). (Public Dataset)

R

Rashid, Sabrina, Singh, Shashank, Navlakha, Saket, Bar-Joseph, Ziv (May 2019) A bacterial based distributed gradient descent model for mass scale evacuations. Swarm and Evolutionary Computation, 46. pp. 97-103. ISSN 2210-6502

Rodriguez-Esteban, R., Iossifov, I., Rzhetsky, A. (September 2006) Imitating manual curation of text-mined facts in biomedicine. PLoS Comput Biol, 2 (9). e118. ISSN 1553-7358 (Electronic)1553-734X (Linking)

Rzhetsky, A., Iossifov, I., Loh, J. M., White, K. P. (March 2006) Microparadigms: chains of collective reasoning in publications about molecular interactions. Proceedings of the National Academy of Sciences of the United States of America, 103 (13). pp. 4940-5. ISSN 0027-8424

S

Shahri, H. H., Namata, G., Navlakha, S., Deshpande, A., Roussopoulos, N. (September 2007) A graph-based approach to vehicle tracking in traffic camera video streams. Proceedings of the 4th workshop on Data management for sensor networks: in conjunction with 33rd International Conference on Very Large Data Bases , 273 . ACM International Conference Proceeding Series, pp. 19-24. ISBN 9781595939111 (ISBN)

Singh, Shashank, Rashid, Sabrina, Long, Zhicheng, Navlakha, Saket, Salman, Hanna, Oltvai, Zoltan, Bar-Joseph, Ziv (April 2016) Distributed Gradient Descent in Bacterial Food Search. Research in Computational Molecular Biology, 9649. ISSN 978-3-319-31957-5

T

Tello-Ruiz, M. K., Marco, C. F., Hsu, F. M., Khangura, R. S., Qiao, P., Sapkota, S., Stitzer, M. C., Wasikowski, R., Wu, H., Zhan, J., Chougule, K., Barone, L. C., Ghiban, C., Muna, D., Olson, A. C., Wang, L., Ware, D., Micklos, D. A. (October 2019) Double triage to identify poorly annotated genes in maize: The missing link in community curation. PLoS ONE, 14 (10). Article number e0224086. ISSN 19326203 (ISSN)

Thor, A., Anderson, P., Raschid, L., Navlakha, S., Saha, B., Khuller, S., Zhang, X. N. (October 2011) Link prediction for annotation graphs using graph summarization. Lecture Notes in Computer Science, 7031 L (Part 1). Springer, pp. 714-729. ISBN 03029743 (ISSN); 9783642250729 (ISBN)

W

Wang, J. T. L., Marr, T. G., Shasha, D., Shapiro, B. A., Chirn, G. W. (July 1994) Discovering Active Motifs in Sets of Related Protein Sequences and Using Them for Classification. Nucleic Acids Research, 22 (14). pp. 2769-2775. ISSN 0305-1048

Z

Zaki, A., Mitra, P. P., Rasmussen, L. K., Chatterjee, S. (March 2019) Estimate exchange over network is good for distributed hard thresholding pursuit. Signal Processing, 156. pp. 1-11. ISSN 01651684 (ISSN)

This list was generated on Fri Dec 6 02:33:51 2019 EST.
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