Items where Subject is "SNP"

Paper

Atwal, G. S., Bond, G. L., Metsuyanim, S., Papa, M., Friedman, E., Distelman-Menachem, T., Ben Asher, E., Lancet, D., Ross, D. A., Sninsky, J., White, T. J., Levine, A. J., Yarden, R. (March 2007) Haplotype structure and selection of the MDM2 oncogene in humans. Proc Natl Acad Sci U S A, 104 (11). pp. 4524-9. ISSN 0027-8424 (Print) 0027-8424 (Linking)

Badner, J. A., Koller, D., Foroud, T., Edenberg, H., Nurnberger, J. I., Zandi, P. P., Willour, V. L., McMahon, F. J., Potash, J. B., Hamshere, M., Grozeva, D., Green, E., Kirov, G., Jones, I., Jones, L., Craddock, N., Morris, D., Segurado, R., Gill, M., Sadovnick, D., Remick, R., Keck, P., Kelsoe, J., Ayub, M., MacLean, A., Blackwood, D., Liu, C. Y., Gershon, E. S., McMahon, W., Lyon, G. J., Robinson, R., Ross, J., Byerley, W. (2012) Genome-wide linkage analysis of 972 bipolar pedigrees using single-nucleotide polymorphisms. Molecular Psychiatry, 17 (8). pp. 818-826. ISSN 1476-5578

Dong, S. L., Wang, E., Hsie, L., Cao, Y. X., Chen, X. G., Gingeras, T. R. (August 2001) Flexible use of high-density oligonucleotide arrays for single-nucleotide polymorphism discovery and validation. Genome Research, 11 (8). pp. 1418-1424. ISSN 1088-9051

Grochowski, C. M., Gu, S., Yuan, B., Tcw, J., Brennand, K. J., Sebat, J., Malhotra, D., McCarthy, S., Rudolph, U., Lindstrand, A., Chong, Z., Levy, D. L., Lupski, J. R., Carvalho, C. M. B. (April 2018) Marker chromosome genomic structure and temporal origin implicate a chromoanasynthesis event in a family with pleiotropic psychiatric phenotypes. Hum Mutat, 39 (7). pp. 939-946. ISSN 1059-7794

Gurtowski, J., Schatz, M. C., Langmead, B. (September 2012) Genotyping in the cloud with crossbow. Current Protocols in Bioinformatics. 15.3. ISSN 1934-340X (Electronic)1934-3396 (Linking)

Hacker, C., Thomas, D., Doshi, J., Kimberly, R. P., Gingeras, T. R., Patil, N. (October 2000) Single nucleotide polymorphism discovery in candidate genes for rheumatoid arthritis. American Journal of Human Genetics, 67 (4). p. 335. ISSN 0002-9297

Hulse-Kemp, Amanda M, Bostan, Hamed, Chen, Shiyu, Ashrafi, Hamid, Stoffel, Kevin, Sanseverino, Walter, Li, Linzhou, Cheng, Shifeng, Schatz, Michael C, Garvin, Tyler, du Toit, Lindsey J, Tseng, Elizabeth, Chin, Jason, Iorizzo, Massimo, Van Deynze, Allen (June 2021) An anchored chromosome-scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids. The Plant Genome. e20101. ISSN 1940-3372

Kang, H. J., Feng, Z., Sun, Y., Atwal, G., Murphy, M. E., Rebbeck, T. R., Rosenwaks, Z., Levine, A. J., Hu, W. (June 2009) Single-nucleotide polymorphisms in the p53 pathway regulate fertility in humans. Proc Natl Acad Sci U S A, 106 (24). pp. 9761-6. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Langmead, B., Schatz, M. C., Lin, J., Pop, M., Salzberg, S. L. (2009) Searching for SNPs with cloud computing. Genome Biology, 10 (11). ISSN 14747596 (ISSN)

Lindblad-Toh, K., Winchester, E., Daly, M. J., Wang, D. G., Hirschhorn, J. N., Laviolette, J. P., Ardlie, K., Reich, D. E., Robinson, E., Sklar, P., Shah, N., Thomas, D., Fan, J. B., Gingeras, T. R., Warrington, J., Patil, N., Hudson, T. J., Lander, E. S. (2000) Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouse. Nature Genetics, 24 (4). pp. 381-386. ISSN 10614036 (ISSN)

Lohia, Ruchi, Hansen, Matthew EB, Brannigan, Grace (March 2022) Contiguously hydrophobic sequences are functionally significant throughout the human exome. Proceedings of the National Academy of Sciences of USA, 119 (12). e2116267119. ISSN 0027-8424

Mehravi, Shaghayegh, Ranjbar, Gholam Ali, Mirzaghaderi, Ghader, Severn-Ellis, Anita Alice, Scheben, Armin, Edwards, David, Batley, Jacqueline (June 2021) De Novo SNP Discovery and Genotyping of Iranian Pimpinella Species Using ddRAD Sequencing. Agronomy, 11 (7). p. 1342. ISSN 2073-4395

Miller, R. D., Phillips, M. S., Jo, I., Donaldson, M. A., Studebaker, J. F., Addleman, N., Alfisi, S. V., Ankener, W. M., Bhatti, H. A., Callahan, C. E., Carey, B. J., Conley, C. L., Cyr, J. M., Derohannessian, V., Donaldson, R. A., Elosua, C., Ford, S. E., Forman, A. M., Gelfand, C. A., Grecco, N. M., Gutendorf, S. M., Hock, C. R., Hozza, M. J., Hur, S., In, S. M., Jackson, D. L., Jo, S. A., Jung, S. C., Kim, S., Kimm, K., Kloss, E. F., Koboldt, D. C., Kuebler, J. M., Kuo, F. S., Lathrop, J. A., Lee, J. K., Leis, K. L., Livingston, S. A., Lovins, E. G., Lundy, M. L., Maggan, S., Minton, M., Mockler, M. A., Morris, D. W., Nachtman, E. P., Oh, B., Park, C., Park, C. W., Pavelka, N., Perkins, A. B., Restine, S. L., Sachidanandam, R., Reinhart, A. J., Scott, K. E., Restine, S. L., Sachidanandam, R., Reinhart, A. J., Scott, K. E., Shah, G. J., Tate, J. M., Varde, S. A., Walters, A., White, J. R., Yoo, Y. K., Lee, J. E., Boyce-Jacino, M. T., Kwok, P. Y. (August 2005) High-density single-nucleotide polymorphism maps of the human genome. Genomics, 86 (2). pp. 117-126. ISSN 0888-7543

Mizuno, H., Atwal, G. S., Wang, H., Levine, A. J., Vazquez, A. (April 2010) Fine-scale detection of population-specific linkage disequilibrium using haplotype entropy in the human genome. BMC Genet, 11. p. 27. ISSN 1471-2156 (Electronic) 1471-2156 (Linking)

Myles, S., Boyko, A. R., Owens, C. L., Brown, P. J., Grassi, F., Aradhya, M. K., Prins, B., Reynolds, A., Chia, J. M., Ware, D. H., Bustamante, C. D., Buckler, E. S. (March 2011) Genetic structure and domestication history of the grape. Proceedings of the National Academy of Sciences of the United States of America, 108 (9). pp. 3530-3535. ISSN 0027-8424

Nelson, K. K., Subbaram, S., Connor, K. M., Dasgupta, J., Ha, X. F., Meng, T. C., Tonks, N. K., Melendez, J. A. (2006) Redox-dependent matrix metalloproteinase-1 expression is regulated by JNK through Ets and AP-1 promoter motifs. Journal of Biological Chemistry, 281 (20). pp. 14100-14110. ISSN 00219258

Pang, Grace SY, Wang, Jingbo, Wang, Zihua, Goh, Cynthia, Lee, Caroline GL (July 2009) The G allele of SNP E1/A118G at the µ-opioid receptor gene locus shows genomic evidence of recent positive selection. Pharmacogenomics, 10 (7). pp. 1101-1109. ISSN 1462-2416

Pang, Grace SY, Wang, Jingbo, Wang, Zihua, Lee, Caroline GL (April 2009) Predicting potentially functional SNPs in drug-response genes. Pharmacogenomics, 10 (4). pp. 639-653. ISSN 1462-2416

Rope, Alan F., Wang, Kai, Evjenth, Rune, Xing, Jinchuan, Johnston, Jennifer J., Swensen, Jeffrey J., Johnson, W. Evan, Moore, Barry, Huff, Chad D., Bird, Lynne M., Carey, John C., Opitz, John M., Stevens, Cathy A., Jiang, Tao, Schank, Christa, Fain, Heidi Deborah, Robison, Reid, Dalley, Brian, Chin, Steven, South, Sarah T., Pysher, Theodore J., Jorde, Lynn B., Hakonarson, Hakon, Lillehaug, Johan R., Biesecker, Leslie G., Yandell, Mark, Arnesen, Thomas, Lyon, Gholson J. (2011) Using VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency. American Journal of Human Genetics, 89 (1). pp. 28-43. ISSN 0002-9297

Varshney, R. K., Penmetsa, R. V., Dutta, S., Kulwal, P. L., Saxena, R. K., Datta, S., Sharma, T. R., Rosen, B., Carrasquilla-Garcia, N., Farmer, A. D., Dubey, A., Saxena, K. B., Gao, J., Fakrudin, B., Singh, M. N., Singh, B. P., Wanjari, K. B., Yuan, M., Srivastava, R. K., Kilian, A., Upadhyaya, H. D., Mallikarjuna, N., Town, C. D., Bruening, G. E., He, G., May, G. D., McCombie, W. R., Jackson, S. A., Singh, N. K., Cook, D. R. (2010) Pigeonpea genomics initiative (PGI): An international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408.

Wang, Z, Wang, J, Chong, S, Lee, C (March 2009) Mining Potential Functionally Significant Polymorphisms at the ATP-Binding- Cassette Transporter Genes. Current Pharmacogenomics and Personalized Medicine: the international journal for expert reviews in pharmacogenomics, 7 (1). pp. 40-58. ISSN 1875-6921

Wang, Zihua, Sew, Pui-Hoon, Chong, Samuel S, Lee, Caroline GL (December 2009) Realtime exonuclease-mediated allelic discrimination (READ): a simple homogeneous genotyping assay for SNPs at the ABC gene loci. Pharmacogenomics, 10 (12). pp. 1995-2001. ISSN 1462-2416

Wang, Zihua, Wang, Baoshuang, Tang, Kun, Lee, Edmund JD, Chong, Samuel S, Lee, Caroline GL (July 2005) A functional polymorphism within the MRP1 gene locus identified through its genomic signature of positive selection. Human Molecular Genetics, 14 (14). pp. 2075-2087. ISSN 0964-6906

Wang, Zihua, Wang, Jingbo, Tantoso, Erwin, Wang, Baoshuang, Tai, Amy YP, Ooi, London LPJ, Chong, Samuel S, Lee, Caroline GL (June 2007) Signatures of recent positive selection at the ATP-binding cassette drug transporter superfamily gene loci. Human Molecular Genetics, 16 (11). pp. 1367-1380. ISSN 0964-6906

Wei, Zhi, Wang, Wei, Hu, Pingzhao, Lyon, Gholson J., Hakonarson, Hakon (2011) SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data. Nucleic Acids Research, 39 (19). e132. ISSN 03051048 (ISSN)

Conference or Workshop Item

Lohia, Ruchi, Hansen, Matthew, Brannigan, Grace H (February 2021) Hydrophobicity Based Sequence Blobulation Approach Captures Functional Modularity: Disease-Associated Mutations are Enriched in Hydrophobic Blobs. In: Biophysical Society Annual Meeting.

Other

Wu, Yiyang (March 2013) The evolution of MIP technology. Journal Club. (Unpublished)