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Lee, T. J., Pascuzzi, P. E., Settlage, S. B., Shultz, R. W., Tanurdzic, M., Rabinowicz, P. D., Menges, M., Zheng, P., Main, D., Murray, J. A. H., Sosinski, B., Allen, G. C., Martienssen, R. A., Hanley-Bowdoin, L., Vaughn, M. W., Thompson, W. F. (June 2010) Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. Plos Genetics, 6 (6). pp. 1-18.

Vaughn, M. W., Tanurdzic, M., Lippman, Z. B., Jiang, H., Carrasquillo, R., Rabinowicz, P. D., Dedhia, N., McCombie, W. R., Agier, N., Bulski, A., Colot, V., Doerge, R. W., Martienssen, R. A. (July 2007) Epigenetic natural variation in Arabidopsis thaliana. PLoS Biology, 5 (7). pp. 1617-1629. ISSN 1544-9173

Rabinowicz, P. D., Citek, R., Budiman, M. A., Nunberg, A., Bedell, J. A., Lakey, N., O'Shaughnessy, A. L., Nascimento, L. U., McCombie, W. R., Martienssen, R. A. (October 2005) Differential methylation of genes and repeats in land plants. Genome Research, 15 (10). pp. 1431-1440. ISSN 1088-9051

Martienssen, R. A., Rabinowicz, P. D., O'Shaughnessy, A., McCombie, W. R. (2004) Sequencing the maize genome. Current Opinion in Plant Biology, 7 (2). pp. 102-107. ISSN 13695266 (ISSN)

Palmer, L. E., Rabinowicz, P. D., O'Shaughnessy, A. L., Balija, V. S., Nascimento, L. U., Dike, S., de la Bastide, M., Martienssen, R. A., McCombie, W. R. (December 2003) Maize genome sequencing by methylation filtrations. Science, 302 (5653). pp. 2115-2117. ISSN 0036-8075

Rabinowicz, P. D., Palmer, L. E., May, B. P., Hemann, M. T., Lowe, S. W., McCombie, W. R., Martienssen, R. A. (December 2003) Genes and transposons are differentially methylated in plants, but not in mammals. Genome Research, 13 (12). pp. 2658-64. ISSN 1088-9051

May, B. P., Liu, H., Vollbrecht, E., Senior, L., Rabinowicz, P. D., Roh, D., Pan, X. K., Stein, L., Freeling, M., Alexander, D., Martienssen, R. (September 2003) Maize-targeted mutagenesis: A knockout resource for maize. Proceedings of the National Academy of Sciences of the United States of America, 100 (20). pp. 11541-11546. ISSN 0027-8424

Rabinowicz, P. D., McCombie, W. R., Martienssen, R. A. (2003) Gene enrichment in plant genomic shotgun libraries. Current Opinion in Plant Biology, 6 (2). pp. 150-156. ISSN 13695266 (ISSN)

Rabinowicz, P. D., Scahidanandam, R. (July 2002) Genomics: More than the sum of the parts. Genome Research, 12 (7). pp. 1015-1016. ISSN 1088-9051

Rabinowicz, P. D. (March 2001) Genomics in Latin America: Reaching the Frontiers. Genome Research, 11 (3). pp. 319-322. ISSN 1088-9051

Rabinowicz, P. D., Byrne, M. E. (2001) Follow that plant! Genome Biology, 2 (2). ISSN 1474-7596

Rabinowicz, P. D., Grotewold, E. (November 2000) A novel reverse-genetic approach (SIMF) identifies Mutator insertions in new Myb genes. Planta, 211 (6). pp. 887-893. ISSN 0032-0935

Rabinowicz, P. D. (July 2000) Are obese plant genomes on a diet? Genome Research, 10 (7). pp. 893-894. ISSN 1088-9051

Rabinowicz, P. D., Braun, E. L., Wolfe, A. D., Bowen, B., Grotewold, E. (September 1999) Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants. Genetics, 153 (1). pp. 427-44. ISSN 0016-6731 (Print)

Rabinowicz, P. D., Schutz, K., Dedhia, N., Yordan, C., Parnell, L. D., Stein, L., McCombie, W. R., Martienssen, R. A. (1999) Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nature Genetics, 23 (3). pp. 305-308. ISSN 10614036 (ISSN)

Book Section

Rabinowicz, Pablo D. (2003) Constructing gene-enriched plant genomic libraries using methylation filtration technology. In: Plant functional genomics: methods and protocols. Methods in Molecular Biology, 236 . Humana Press, pp. 21-36.