Browse by CSHL Author

Paper

Liu, Lingjie, Zhao, Yixin, Hassett, Rebecca, Toneyan, Shushan, Koo, Peter K, Siepel, Adam (February 2025) Probabilistic and machine-learning methods for predicting local rates of transcription elongation from nascent RNA sequencing data. Nucleic Acids Research (NAR), 53 (4). ISSN 1362-4962 (Public Dataset)

Liu, Lingjie, Zhao, Yixin, Siepel, Adam (December 2023) DNA-sequence and epigenomic determinants of local rates of transcription elongation. bioRxiv. (Submitted)

Zhao, Yixin, Liu, Lingjie, Hassett, Rebecca, Siepel, Adam (October 2023) Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cells. Nucleic Acids Research. ISSN 0305-1048

Zhao, Yixin, Liu, Lingjie, Siepel, Adam (2022) Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cells. bioRxiv. (Submitted)

Siepel, Adam, Zhao, Yixin, Liu, Lingjie (2022) Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cells. Research Square. (Submitted)