Exceptional Edges matrices from "Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks Gillis, J. and Pavlidis, P. (2012) PLoS Computational Biology, 8 (3).

Gillis, J., Pavlidis, P. (2012) Exceptional Edges matrices from "Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks Gillis, J. and Pavlidis, P. (2012) PLoS Computational Biology, 8 (3). [Dataset]

[img] Other (Human Exceptional Edges matrices (MatLab))
human_excep.mat - Published Version
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[img] Other (Yeast Exceptional Edges matrices (MatLab))
yeast_excep.mat - Published Version
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[img] Plain Text (Human Exceptional Edges matrices (Text))
human_exception_list.txt - Published Version
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[img] Plain Text (Yeast Exceptional Edges matrices (Text))
yeast_exception_list.txt - Published Version
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URL: http://www.chibi.ubc.ca/faculty/paul-pavlidis/pavl...

Abstract

These are the interaction matrices, with each gene replaced by a score indicating its agregate exceptionality. The underlying data (which gives criticality for each GO group, as opposed to an aggregate score) is some gigabytes large. The exceptionality matrices are sufficient to replicate almost all the results of the paper (but, unfortunately, doesn’t let one examine the criticality of individual GO subnetworks).

Item Type: Dataset
Subjects: bioinformatics
bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification
bioinformatics > genomics and proteomics > genetics & nucleic acid processing
bioinformatics > genomics and proteomics
bioinformatics > computational biology
bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > genes, structure and function
CSHL Authors:
Communities: CSHL labs > Gillis Lab
Depositing User: Matt Covey
Date Deposited: 29 Apr 2013 15:42
Last Modified: 29 Apr 2013 15:42
Related URLs:
URI: http://repository.cshl.edu/id/eprint/28276

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