The Oryza Map Alignment Project: The golden path to unlocking the genetic potential of wild rice species

Wing, R. A., Ammiraju, J. S. S., Luo, M. Z. X., Kim, H., Yu, Y. S., Kudrna, D., Goicoechea, J. L., Wang, W. M., Nelson, W., Rao, K., Brar, D., Mackill, D. J., Han, B., Soderlund, C., Stein, L., SanMiguel, P., Jackson, S. (September 2005) The Oryza Map Alignment Project: The golden path to unlocking the genetic potential of wild rice species. Plant Molecular Biology, 59 (1). pp. 53-62. ISSN 0167-4412

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Abstract

The wild species of the genus Oryza offer enormous potential to make a significant impact on agricultural productivity of the cultivated rice species Oryza sativa and Oryza glaberrima. To unlock the genetic potential of wild rice we have initiated a project entitled the 'Oryza Map Alignment Project' (OMAP) with the ultimate goal of constructing and aligning BAC/STC based physical maps of 11 wild and one cultivated rice species to the International Rice Genome Sequencing Project's finished reference genome - O. sativa ssp. japonica c. v. Nipponbare. The 11 wild rice species comprise nine different genome types and include six diploid genomes (AA, BB, CC, EE, FF and GG) and four tetrapliod genomes (BBCC, CCDD, HHKK and HHJJ) with broad geographical distribution and ecological adaptation. In this paper we describe our strategy to construct robust physical maps of all 12 rice species with an emphasis on the AA diploid O. nivara - thought to be the progenitor of modern cultivated rice.

Item Type: Paper
Uncontrolled Keywords: BAC-end sequencing comparative genomics physical mapping rice wild species Sativa Cultivated rice draft sequence GENOME CHROMOSOMES constans GRASSES MARKERS
Subjects: bioinformatics > genomics and proteomics > annotation > map annotation
organism description > plant > Oryza
CSHL Authors:
Communities: CSHL labs > Stein lab
Depositing User: CSHL Librarian
Date: September 2005
Date Deposited: 21 Dec 2011 16:52
Last Modified: 21 Dec 2011 16:52
URI: http://repository.cshl.edu/id/eprint/22735

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