Items where Community is "Undergraduate Research Program"

Paper

Daruwalla, Kyle, Nozal Martin, Irene, Zhang, Linghua, Naglič, Diana, Frankel, Andrew, Rasgaitis, Catherine, Zhao, Rubin, Zhang, Xinyan, Ahmad, Zainab, Borniger, Jeremy C, Hou, Xun Helen (April 2026) Cheese3D enables sensitive detection and analysis of whole-face movement in mice. Nature Neuroscience. ISSN 1097-6256 (Public Dataset)

Ferro, Austin, Vita, Dominic J, Fallon, Trevor, Arshad, Anosha, Boyd, Leah, Stanley, Tess, Lin, Qianyu, Berisha, Adrian, Vrudhula, Uma, Gomez, Adrian M, Sanchez-Martin, Irene, Borniger, Jeremy C, Cheadle, Lucas (January 2026) Fn14 is an activity-dependent, Bmal1-regulated cytokine receptor that induces rod-like microglia and restricts neuronal activity in vivo. Cell Reports, 45 (2). p. 116926. ISSN 2211-1247 (Public Dataset)

Gladman, Nicholas, Olson, Andrew, Kumari, Sunita, Wei, Sharon, Chougule, Kapeel, Lu, Zhenyuan, Tello-Ruiz, Marcela K, Van Buren, Peter, Kumar, Vivek, Zhang, Lifang, Olson, Audra, Kim, Catherine, Braynen, Janeen, Hayes, Chad, Xin, Zhanguo, Klein, Robert, Rooney, William, Provart, Nicholas, Pasha, Asher, O'Meara, Abigail, Shakoor, Nadia, Michael, Todd P, Harrison, Melanie, Ware, Doreen (January 2026) SorghumBase: a knowledgebase for sorghum genomics, phenomics, and stakeholder engagement. Genetics. iyaf266. ISSN 0016-6731

Olson, Andrew, Kumari, Sunita, Wei, Xuehong, Chougule, Kapeel, Lu, Zhenyuan, Tello-Ruiz, Marcela Karey, Kumar, Vivek, Van Buren, Peter, Olson, Audra, Kim, Catherine, Braynen, Janeen, Zhang, Lifang, Dyer, Sarah, Alvarez-Jarreta, Jorge, Saraf, Shradha, Contreras-Moreira, Bruno, Naamati, Guy, Ernst, Christina, Papatheodorou, Irene, George, Nancy, Jaiswal, Pankaj, Naithani, Sushma, Gupta, Parul, Elser, Justin, D'Eustachio, Peter, Assmann, Sarah M, Ferrero-Serrano, Ángel, Pasha, Asher, Provart, Nicholas, Gladman, Nicholas, Ware, Doreen (December 2025) Gramene 2025: expanded comparative genomics and pathway resources, integrated search, and pan-genome portals for crop research. Nucleic Acids Research (NAR). ISSN 0305-1048

Steinberg, Josh I, Sertznig, Helene, Desmarais, John J, Wilken, Jenna, Rubio, Daisy, Peacey, Matthew, Kinney, Justin B, Schorn, Andrea J (May 2025) HENMT1 restricts endogenous retrovirus activity by methylation of 3'-tRNA fragments. bioRxiv. ISSN 2692-8205 (Public Dataset) (Submitted)

Wei, Sharon, Chougule, Kapeel, Olson, Andrew, Lu, Zhenyuan, Tello-Ruiz, Marcela K, Kumar, Vivek, Kumari, Sunita, Zhang, Lifang, Olson, Audra, Kim, Catherine, Gladman, Nick, Ware, Doreen (April 2025) GrameneOryza: a comprehensive resource for Oryza genomes, genetic variation, and functional data. Database : the journal of biological databases and curation, 2025. ISSN 1758-0463 (Public Dataset)

Voss, Dillon M, Kral, Alexander J, Sim, GeunYoung, Utama, Raditya, Lin, Kuan-Ting, Cizmeciyan, Chris, Schafer, Balazs, Cunniff, Patrick J, Vakoc, Christopher R, Caruthers, Marvin H, Mishra, Lopa, Krainer, Adrian R (February 2025) PKM splice-switching ASOs induce upregulation of dual-specificity phosphatases and dephosphorylation of ERK1/2 in hepatocellular carcinoma. Journal of Biological Chemistry. p. 108345. ISSN 0021-9258

Nowlan, Alexandra C, Choe, Jane, Tromblee, Hoda, Kelahan, Clancy, Hellevik, Karin, Shea, Stephen D (November 2024) Multisensory integration of social signals by a pathway from the basal amygdala to the auditory cortex in maternal mice. Current Biology. ISSN 0960-9822

Dasgupta, Sanjoy, Meirovitch, Yaron, Zheng, Xingyu, Bush, Inle, Lichtman, Jeff W, Navlakha, Saket (September 2024) A neural algorithm for computing bipartite matchings. Proceedings of the National Academy of Sciences of the United States of America, 121 (37). e2321032121. ISSN 0027-8424 (Public Dataset)

Dumontier, Dimitri, Liebman, Samuel A, Le, Viet-Hang, George, Shanu, Valdemar, Deasia, Van Aelst, Linda, Pouchelon, Gabrielle (September 2024) Restoring transient connectivity during development improves dysfunctions in fragile X mice. bioRxiv. ISSN 2692-8205 (Submitted)

Zheng, Xingyu, Venezia, Matthew, Blum, Elijah, Pedmale, Ullas V, Jackson, Dave, Prusinkiewicz, Przemyslaw, Navlakha, Saket (July 2024) Reticulate leaf venation in Pilea peperomioides is a Voronoi diagram. bioRxiv. ISSN 2692-8205 (Submitted)

Henry, Samantha, Lewis, Steven Macauley, Cyrill, Samantha Leeanne, Callaway, Mackenzie Kate, Chatterjee, Deeptiman, Hanasoge Somasundara, Amritha Varshini, Jones, Gina, He, Xue-Yan, Caligiuri, Giuseppina, Ciccone, Michael Francis, Diaz, Isabella Andrea, Biswas, Amelia Aumalika, Hernandez, Evelyn, Ha, Taehoon, Wilkinson, John Erby, Egeblad, Mikala, Tuveson, David Arthur, Dos Santos, Camila Oresco (April 2024) Host response during unresolved urinary tract infection alters female mammary tissue homeostasis through collagen deposition and TIMP1. Nature Communications, 15 (1). p. 3282. ISSN 2041-1723 (Public Dataset)

Jorstad, Nikolas L, Song, Janet HT, Exposito-Alonso, David, Suresh, Hamsini, Castro-Pacheco, Nathan, Krienen, Fenna M, Yanny, Anna Marie, Close, Jennie, Gelfand, Emily, Long, Brian, Seeman, Stephanie C, Travaglini, Kyle J, Basu, Soumyadeep, Beaudin, Marc, Bertagnolli, Darren, Crow, Megan, Ding, Song-Lin, Eggermont, Jeroen, Glandon, Alexandra, Goldy, Jeff, Kiick, Katelyn, Kroes, Thomas, McMillen, Delissa, Pham, Trangthanh, Rimorin, Christine, Siletti, Kimberly, Somasundaram, Saroja, Tieu, Michael, Torkelson, Amy, Feng, Guoping, Hopkins, William D, Höllt, Thomas, Keene, C Dirk, Linnarsson, Sten, McCarroll, Steven A, Lelieveldt, Boudewijn P, Sherwood, Chet C, Smith, Kimberly, Walsh, Christopher A, Dobin, Alexander, Gillis, Jesse, Lein, Ed S, Hodge, Rebecca D, Bakken, Trygve E (October 2023) Comparative transcriptomics reveals human-specific cortical features. Science, 382 (6667). eade9516. ISSN 0036-8075

Ferrer, Miriam, Mourikis, Nicholas, Davidson, Emma E, Kleeman, Sam O, Zaccaria, Marta, Habel, Jill, Rubino, Rachel, Gao, Qing, Flint, Thomas R, Young, Lisa, Connell, Claire M, Lukey, Michael J, Goncalves, Marcus D, White, Eileen P, Venkitaraman, Ashok R, Janowitz, Tobias (July 2023) Ketogenic diet promotes tumor ferroptosis but induces relative corticosterone deficiency that accelerates cachexia. Cell Metabolism, 35 (7). 1147-1162.e7. ISSN 1550-4131

Velt, Amandine, Frommer, Bianca, Blanc, Sophie, Holtgräwe, Daniela, Duchêne, Éric, Dumas, Vincent, Grimplet, Jérôme, Hugueney, Philippe, Kim, Catherine, Lahaye, Marie, Matus, José Tomás, Navarro-Payá, David, Orduña, Luis, Tello-Ruiz, Marcela K, Vitulo, Nicola, Ware, Doreen, Rustenholz, Camille (May 2023) An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype. G3: Genes, Genomes, Genetics, 13 (5). jkad067. ISSN 2160-1836

Meze, Katarina, Axhemi, Armend, Thomas, Dennis R, Doymaz, Ahmet, Joshua-Tor, Leemor (February 2023) A shape-shifting nuclease unravels structured RNA. Nature Structural and Molecular Biology. ISSN 1545-9993 (Public Dataset)

Musall, Simon, Sun, Xiaonan R, Mohan, Hemanth, An, Xu, Gluf, Steven, Li, Shu-Jing, Drewes, Rhonda, Cravo, Emma, Lenzi, Irene, Yin, Chaoqun, Kampa, Björn M, Churchland, Anne K (January 2023) Pyramidal cell types drive functionally distinct cortical activity patterns during decision-making. Nature Neuroscience. ISSN 1097-6256

Auguste, Yohan SS, Ferro, Austin, Kahng, Jessica A, Xavier, Andre M, Dixon, Jessica R, Vrudhula, Uma, Nichitiu, Anne-Sarah, Rosado, Daniele, Wee, Tse-Luen, Pedmale, Ullas V, Cheadle, Lucas (September 2022) Oligodendrocyte precursor cells engulf synapses during circuit remodeling in mice. Nature Neuroscience. ISSN 1097-6256

Genkin, Mikhail, Hughes, Owen, Engel, Tatiana A (October 2021) Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories. Nature Communications, 12 (1). p. 5986. ISSN 2041-1723

Henry, Samantha, Trousdell, Marygrace C, Cyrill, Samantha L, Zhao, Yixin, Feigman, Mary J, Bouhuis, Julia M, Aylard, Dominik A, Siepel, Adam, Dos Santos, Camila O (May 2021) Characterization of Gene Expression Signatures for the Identification of Cellular Heterogeneity in the Developing Mammary Gland. Journal of Mammary Gland Biology and Neoplasia. ISSN 1083-3021