Browse by CSHL Author

Paper

Benoit, Matthias, Jenike, Katharine M, Satterlee, James W, Ramakrishnan, Srividya, Gentile, Iacopo, Hendelman, Anat, Passalacqua, Michael J, Suresh, Hamsini, Shohat, Hagai, Robitaille, Gina M, Fitzgerald, Blaine, Alonge, Michael, Wang, Xingang, Santos, Ryan, He, Jia, Ou, Shujun, Golan, Hezi, Green, Yumi, Swartwood, Kerry, Karavolias, Nicholas G, Sierra, Gina P, Orejuela, Andres, Roda, Federico, Goodwin, Sara, McCombie, W Richard, Kizito, Elizabeth B, Gagnon, Edeline, Knapp, Sandra, Särkinen, Tiina E, Frary, Amy, Gillis, Jesse, Van Eck, Joyce, Schatz, Michael C, Lippman, Zachary B (March 2025) Solanum pan-genetics reveals paralogues as contingencies in crop engineering. Nature. ISSN 0028-0836 (Public Dataset)

Benoit, Matthias, Jenike, Katharine M, Satterlee, James W, Ramakrishnan, Srividya, Gentile, Iacopo, Hendelman, Anat, Passalacqua, Michael J, Suresh, Hamsini, Shohat, Hagai, Robitaille, Gina M, Fitzgerald, Blaine, Alonge, Michael M, Wang, Xingang, Santos, Ryan, He, Jia, Ou, Shujun, Golan, Hezi, Green, Yumi, Swartwood, Kerry, Sierra, Gina P, Orejuela, Andres, Fornaguera, Federico, Goodwin, Sara, McCombie, William Richard, Kizito, Elizabeth Balyejusa, Gagnon, Edeline, Knapp, Sandra, Sarkinen, Tiina, Frary, Amy, Gillis, Jesse, Van Eck, Joyce, Schatz, Michael C, Lippman, Zachary B (September 2024) Solanum pan-genomics and pan-genetics reveal paralogs as contingencies in crop engineering. bioRxiv. ISSN 2692-8205 (Submitted)

Suresh, Hamsini, Crow, Megan, Jorstad, Nikolas, Hodge, Rebecca, Lein, Ed, Dobin, Alexander, Bakken, Trygve, Gillis, Jesse (September 2023) Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution. Nature Ecology and Evolution. ISSN 2397-334X

Crow, Megan, Suresh, Hamsini, Lee, John, Gillis, Jesse (April 2022) Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms. Nucleic Acids Research. ISSN 0305-1048

Suresh, Hamsini, Crow, Megan, Jorstad, Nikolas, Hodge, Rebecca, Lein, Ed, Dobin, Alexander, Bakken, Trygve, Gillis, Jesse (2022) Conserved coexpression at single cell resolution across primate brains. (Submitted)

Crow, Megan, Suresh, Hamsini, Lee, John, Gillis, Jesse (November 2020) Coexpression reveals conserved mechanisms of transcriptional cell identity. BioRxiv. (Unpublished)

Alonge, M., Wang, X., Benoit, M., Soyk, S., Pereira, L., Zhang, L., Suresh, H., Ramakrishnan, S., Maumus, F., Ciren, D., Levy, Y., Harel, T. H., Shalev-Schlosser, G., Amsellem, Z., Razifard, H., Caicedo, A. L., Tieman, D. M., Klee, H., Kirsche, M., Aganezov, S., Ranallo-Benavidez, T. R., Lemmon, Z. H., Kim, J., Robitaille, G., Kramer, M., Goodwin, S., McCombie, W. R., Hutton, S., Van Eck, J., Gillis, J., Eshed, Y., Sedlazeck, F. J., van der Knaap, E., Schatz, M. C., Lippman, Z. B. (July 2020) Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato. Cell, 182 (1). 145-161.e23. ISSN 0092-8674 (Print)0092-8674