On the mechanism of calcium permeability and magnesium block in NMDA receptors - a central molecular paradigm in neuroplasticity

Steigerwald, Ruben, Epstein, Max, Chou, Tsung-Han, Furukawa, Hiro (November 2025) On the mechanism of calcium permeability and magnesium block in NMDA receptors - a central molecular paradigm in neuroplasticity. bioRxiv. ISSN 2692-8205 (Submitted)

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Abstract

Neuroplasticity is a fundamental cellular mechanism underlying learning and memory formation and is primed by the coincidental detection of neurotransmitter release from the presynapse and the subsequent calcium influx upon voltage change in the postsynaptic membrane (Bliss and Collingridge, 1993). Molecular assemblies that achieve these events are N-methyl-D-aspartate receptors (NMDARs), which bind the neurotransmitter glutamate and a co-agonist, either glycine or D-serine, and allow Ca2+ influx upon relief of the Mg2+ channel blockade by membrane depolarization. However, the molecular basis governing Ca2+ permeability and Mg2+ blockade in NMDAR remains limited. Here, we demonstrate that Ca2+ permea on through the narrow constriction of the cation selectivity filter involves partial dehydration, as evidenced by multiple Ca2+ binding sites captured using single-particle cryo-electron microscopy (cryo-EM). In contrast, Mg2+ binds outside of the selectivity filter through the water network by remaining hydrated, thereby serving as a channel blocker. Furthermore, we show that the lipid network around the selectivity filter influences the stability of Mg2+ binding. Our study details the critical transmembrane chemistry of NMDAR for initiating neuroplasticity.

Item Type: Paper
Subjects: bioinformatics
bioinformatics > genomics and proteomics > genetics & nucleic acid processing
bioinformatics > genomics and proteomics
bioinformatics > genomics and proteomics > genetics & nucleic acid processing > protein structure, function, modification > protein types > NMDA receptor
bioinformatics > genomics and proteomics > small molecules > NMDA receptor
bioinformatics > genomics and proteomics > genetics & nucleic acid processing > protein structure, function, modification
bioinformatics > genomics and proteomics > genetics & nucleic acid processing > protein structure, function, modification > protein types
bioinformatics > genomics and proteomics > small molecules
CSHL Authors:
Communities: CSHL labs > Furukawa lab
CSHL Post Doctoral Fellows
SWORD Depositor: CSHL Elements
Depositing User: CSHL Elements
Date: 7 November 2025
Date Deposited: 08 Dec 2025 14:44
Last Modified: 08 Dec 2025 14:44
PMCID: PMC12637613
Related URLs:
URI: https://repository.cshl.edu/id/eprint/42029

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