Author Correction: Comparative and demographic analysis of orang-utan genomes

Locke, Devin P, Hillier, LaDeana W, Warren, Wesley C, Worley, Kim C, Nazareth, Lynne V, Muzny, Donna M, Yang, Shiaw-Pyng, Wang, Zhengyuan, Chinwalla, Asif T, Minx, Pat, Mitreva, Makedonka, Cook, Lisa, Delehaunty, Kim D, Fronick, Catrina, Schmidt, Heather, Fulton, Lucinda A, Fulton, Robert S, Nelson, Joanne O, Magrini, Vincent, Pohl, Craig, Graves, Tina A, Markovic, Chris, Cree, Andy, Dinh, Huyen H, Hume, Jennifer, Kovar, Christie L, Fowler, Gerald R, Lunter, Gerton, Meader, Stephen, Heger, Andreas, Ponting, Chris P, Marques-Bonet, Tomas, Alkan, Can, Chen, Lin, Cheng, Ze, Kidd, Jeffrey M, Eichler, Evan E, White, Simon, Searle, Stephen, Vilella, Albert J, Chen, Yuan, Flicek, Paul, Ma, Jian, Raney, Brian, Suh, Bernard, Burhans, Richard, Herrero, Javier, Haussler, David, Faria, Rui, Fernando, Olga, Darré, Fleur, Farré, Domènec, Gazave, Elodie, Oliva, Meritxell, Navarro, Arcadi, Roberto, Roberta, Capozzi, Oronzo, Archidiacono, Nicoletta, Della Valle, Giuliano, Purgato, Stefania, Rocchi, Mariano, Konkel, Miriam K, Walker, Jerilyn A, Ullmer, Brygg, Batzer, Mark A, Smit, Arian FA, Hubley, Robert, Casola, Claudio, Schrider, Daniel R, Hahn, Matthew W, Quesada, Victor, Puente, Xose S, Ordoñez, Gonzalo R, López-Otín, Carlos, Vinar, Tomas, Brejova, Brona, Ratan, Aakrosh, Harris, Robert S, Miller, Webb, Kosiol, Carolin, Lawson, Heather A, Taliwal, Vikas, Martins, André L, Siepel, Adam, RoyChoudhury, Arindam, Ma, Xin, Degenhardt, Jeremiah, Bustamante, Carlos D, Gutenkunst, Ryan N, Mailund, Thomas, Dutheil, Julien Y, Hobolth, Asger, Schierup, Mikkel H, Ryder, Oliver A, Yoshinaga, Yuko, de Jong, Pieter J, Weinstock, George M, Rogers, Jeffrey, Mardis, Elaine R, Gibbs, Richard A, Wilson, Richard K (August 2022) Author Correction: Comparative and demographic analysis of orang-utan genomes. Nature, 608 (7924). E36. ISSN 0028-0836

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Abstract

In this Article, we reported genome sequencing data from five Sumatran and five Bornean orang-utans. In re-analysing these data, Banes et al.1 found that eight of the ten samples were mislabelled, and we wish to correct the original publication according to their findings. In addition, Banes et al.1 find that one of the orang-utans that we had labelled as a male Sumatran is in fact a female Tapanuli orang-utan (an orang-utan species that was unknown at the time of publication of our original Article and that was first reported in 2017 (ref. 2)). While we here correct the original tables to display the correct names and IDs of the individuals studied, we do not correct the analyses in the original paper since the Tapanuli species was discovered only after we had concluded our study. We refer the reader to Banes et al.1 for further information. In the main text, the sentence “We also sequenced the genomes of 10 additional unrelated wild-caught orang-utans, five Sumatran and five Bornean, using a short read sequencing platform (297 Gb of data in total; Supplementary Information section 4)” should have read “We also sequenced the genomes of 10 additional unrelated wild-caught orang-utans, four Sumatran, five Bornean and one Tapanuli, using a short read sequencing platform (297 Gb of data in total; Supplementary Information section 4)”. In addition, the sentence “We then called single nucleotide polymorphisms (SNPs) from the alignment of all short read data from 10 individuals (five Bornean, including the 20-fold coverage mentioned above, and five Sumatran) (Supplementary Information section 4)” should have read “We then called single nucleotide polymorphisms (SNPs) from the alignment of all short read data from 10 individuals (five Bornean, including the 20-fold coverage mentioned above, four Sumatran and one Tapanuli) (Supplementary Information section 4).

Item Type:	Paper
Subjects:	bioinformatics bioinformatics > genomics and proteomics > genetics & nucleic acid processing bioinformatics > genomics and proteomics organism description > animal bioinformatics > genomics and proteomics > genetics & nucleic acid processing > genomes organism description > animal > mammal organism description > animal > mammal > primates
CSHL Authors:	Siepel, Adam
Communities:	CSHL labs > Siepel lab
SWORD Depositor:	CSHL Elements
Depositing User:	CSHL Elements
Date:	August 2022
Date Deposited:	13 Oct 2023 17:55
Last Modified:	16 Jan 2024 18:39
PMCID:	PMC9402433
Related URLs:	Publisher
URI:	https://repository.cshl.edu/id/eprint/41261

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