Najafi, Farzaneh, Elsayed, Gamaleldin F, Cao, Robin, Pnevmatikakis, Eftychios, Latham, Peter E, Cunningham, John P, Churchland, Anne K (February 2019) Dataset from "Farzaneh Najafi, Gamaleldin F Elsayed, Robin Cao, Eftychios Pnevmatikakis, Peter E. Latham, John P Cunningham, Anne K Churchland (bioRxiv, 2018); Excitatory and inhibitory subnetworks are equally selective during decision-making and emerge simultaneously during learning.”. [Dataset] (Unpublished)
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Abstract
This package contains data, in NWB (Neurodata Without Borders) format, from the 4 mice included in "Farzaneh Najafi, Gamaleldin F Elsayed, Robin Cao, Eftychios Pnevmatikakis, Peter E. Latham, John P Cunningham, Anne K Churchland (bioRxiv, 2018); Excitatory and inhibitory subnetworks are equally selective during decision-making and emerge simultaneously during learning.” The "FN_dataSharing/nwb' folder contains NWB files for all recorded sessions for four mice discussed in the paper. Each NWB file represents the data and metadata associated with one recording session. In each NWB file, the metadata related to the session (mouse name, session date/time, lab/institution name, etc.) can be found under "general". Information related to ROI-segmentation such as ROI mask, ROI type (excitatory or inhibitory), poor or good quality, etc. can be found under "modules/Image-Segmentation/pln-seg". Trial information (e.g. start, end times, trial types, trial outcomes, etc.) can be found under "trials". Recorded trial-segmented neuronal responses aligned to different time event (e.g. stimulus start, animal choice, etc.) can be found under "modules/ Trial-based-Segmentation". A jupyter notebook presenting in detail how to work with NWB files is provided at https://github.com/ttngu207/najafi-2018-nwb/blob/master/notebooks/Najafi-2018_example.ipynb.
| Item Type: | Dataset |
|---|---|
| Additional Information: | NWB 2.0 files were created in January 2019. Using custom conversion script (https://github.com/vathes/najafi-2018-nwb). Software is required to use the data: Python 3.7, PyNWB Structural metadata: There are 135 NWB 2.0 (.nwb) files, each represent a single session. Dataset available at: <a href="http://labshare.cshl.edu/shares/library/repository/37693/">Dataset 37693</a> |
| Subjects: | organs, tissues, organelles, cell types and functions > cell types and functions > cell types > neurons organs, tissues, organelles, cell types and functions > cell types and functions > cell types > neurons organs, tissues, organelles, cell types and functions > cell types and functions > cell types > neurons |
| CSHL Authors: | |
| Communities: | CSHL labs > Churchland lab |
| Depositing User: | Tom Adams |
| Date: | 15 February 2019 |
| Date Deposited: | 15 Feb 2019 16:41 |
| Last Modified: | 11 Dec 2019 17:24 |
| Related URLs: | |
| URI: | https://repository.cshl.edu/id/eprint/37693 |
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