Biton,  M., Haber,  A. L., Rogel,  N., Burgin,  G., Beyaz,  S., Schnell,  A., Ashenberg,  O., Su,  C. W., Smillie,  C., Shekhar,  K., Chen,  Z., Wu,  C., Ordovas-Montanes,  J., Alvarez,  D., Herbst,  R. H., Zhang,  M., Tirosh,  I., Dionne,  D., Nguyen,  L. T., Xifaras,  M. E., Shalek,  A. K., von Andrian,  U. H., Graham,  D. B., Rozenblatt-Rosen,  O., Shi,  H. N., Kuchroo,  V., Yilmaz,  O. H., Regev,  A., Xavier,  R. J.
  
(October 2018)
T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation.
    Cell, 175 (5).
     pp. 1307-1320.
     ISSN 0092-8674
    
  
  
  
  
  
    
      
      
    
  
    
  
  
    
  
  
    
  
  
    Abstract
    In the small intestine, a niche of accessory cell types supports the generation of mature epithelial cell types from intestinal stem cells (ISCs). It is unclear, however, if and how immune cells in the niche affect ISC fate or the balance between self-renewal and differentiation. Here, we use single-cell RNA sequencing (scRNA-seq) to identify MHC class II (MHCII) machinery enrichment in two subsets of Lgr5(+) ISCs. We show that MHCII(+) Lgr5(+) ISCs are non-conventional antigen-presenting cells in co-cultures with CD4(+) T helper (Th) cells. Stimulation of intestinal organoids with key Th cytokines affects Lgr5(+) ISC renewal and differentiation in opposing ways: pro-inflammatory signals promote differentiation, while regulatory cells and cytokines reduce it. In vivo genetic perturbation of Th cells or MHCII expression on Lgr5(+) ISCs impacts epithelial cell differentiation and IEC fate during infection. These interactions between Th cells and Lgr5(+) ISCs, thus, orchestrate tissue-wide responses to external signals.
  
  
    
      | Item Type: | Paper | 
    
    
      
    
      
    
      
    
      
        
          | Subjects: | Investigative techniques and equipment organism description > animal
 Investigative techniques and equipment > assays
 Investigative techniques and equipment > cell culture > cancer organoids
 Investigative techniques and equipment > cell culture
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell functions > cell differentiation
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell functions
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types
 organs, tissues, organelles,  cell types and functions > cell types and functions
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types > epithelial cell
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types > epithelial cell
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types > epithelial cell
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types > epithelial cells
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types > epithelial cells
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types > epithelial cells
 organism description > animal > mammal
 organism description > animal > mammal > rodent > mouse
 organs, tissues, organelles,  cell types and functions
 Investigative techniques and equipment > assays > RNA-seq
 organism description > animal > mammal > rodent
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types > stem cells
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types > stem cells
 organs, tissues, organelles,  cell types and functions > cell types and functions > cell types > stem cells
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          | CSHL Authors: |  | 
      
    
      
        
          | Communities: | CSHL labs > Beyaz lab CSHL Cancer Center Program
 CSHL Cancer Center Program > Cancer Genetics and Genomics Program
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          | Depositing User: | Matthew Dunn | 
      
    
      
        
          | Date: | 26 October 2018 | 
      
    
      
        
          | Date Deposited: | 12 Nov 2018 20:43 | 
      
    
      
        
          | Last Modified: | 28 Feb 2025 15:27 | 
      
    
      
        
          | PMCID: | PMC6239889 | 
      
    
      
        
          | Related URLs: |  | 
      
    
      
    
    
      | URI: | https://repository.cshl.edu/id/eprint/37352 | 
  
  
  
  
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