Wang, L., Lu, Z., Van Buren, P., Ware, D. (June 2018) SciApps: A cloud-based platform for reproducible bioinformatics workflows. Bioinformatics, 34 (22). pp. 3917-3920. ISSN 1367-4803
Abstract
Motivation: The rapid accumulation of both sequence and phenotype data generated by high-throughput methods has increased the need to store and analyze data on distributed storage and computing systems. Efficient data management across these heterogeneous systems requires a workflow management system to simplify the task of analysis through automation and make large-scale bioinformatics analyses accessible and reproducible. Results: We developed SciApps, a web-based platform for reproducible bioinformatics workflows. The platform is designed to automate the execution of modular Agave apps and support execution of workflows on local clusters or in a cloud. Two workflows, one for association and one for annotation, are provided as exemplar scientific use cases. Availability: https://www.sciapps.org. Supplementary information: Supplementary data are available at Bioinformatics online.
| Item Type: | Paper |
|---|---|
| Subjects: | bioinformatics |
| CSHL Authors: | |
| Communities: | CSHL labs > Ware lab |
| Depositing User: | Matt Covey |
| Date: | 12 June 2018 |
| Date Deposited: | 20 Jun 2018 21:06 |
| Last Modified: | 20 Dec 2018 17:35 |
| PMCID: | PMC6223375 |
| Related URLs: | |
| URI: | https://repository.cshl.edu/id/eprint/36745 |
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