Zhu, J., Zhang, M. Q. (July 1999) SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics, 15 (7-8). pp. 607-11. ISSN 1367-4803 (Print)
Abstract
MOTIVATION: In order to facilitate a systematic study of the promoters and transcriptionally regulatory cis-elements of the yeast Saccharomyces cerevisiae on a genomic scale, we have developed a comprehensive yeast-specific promoter database, SCPD. RESULTS: Currently SCPD contains 580 experimentally mapped transcription factor (TF) binding sites and 425 transcriptional start sites (TSS) as its primary data entries. It also contains relevant binding affinity and expression data where available. In addition to mechanisms for promoter information (including sequence) retrieval and a data submission form, SCPD also provides some simple but useful tools for promoter sequence analysis. AVAILABILITY: SCPD can be accessed from the URL http://cgsigma.cshl.org/jian. The database is continually updated.
| Item Type: | Paper |
|---|---|
| Uncontrolled Keywords: | Binding Sites/genetics Databases, Factual Genes, Fungal Genes, Regulator Genome, Fungal Promoter Regions (Genetics) Research Support, U.S. Gov't, P.H.S. Saccharomyces cerevisiae/ genetics/metabolism TATA Box Transcription Factors/metabolism |
| Subjects: | organism description > yeast > Saccharomyces bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > DNA expression > promoter bioinformatics > genomics and proteomics > genetics & nucleic acid processing > protein structure, function, modification > protein types > transcription factor |
| CSHL Authors: | |
| Communities: | CSHL labs > Zhang lab |
| Depositing User: | Kathleen Darby |
| Date: | July 1999 |
| Date Deposited: | 23 Apr 2014 17:49 |
| Last Modified: | 23 Apr 2014 17:49 |
| Related URLs: | |
| URI: | https://repository.cshl.edu/id/eprint/29840 |
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