Matasci, N., McKay, S. (June 2013) Phylogenetic analysis with the iPlant discovery environment. Current protocols in bioinformatics (SUPPL.). 6.13.1-6.13.13. ISSN 19343396 (ISSN)
Abstract
The iPlant Collaborative's Discovery Environment is a unified Web portal to many bioinformatics applications and analytical workflows, including various methods of phylogenetic analysis. This unit describes example protocols for phylogenetic analyses, starting at sequence retrieval from the GenBank sequence database, through to multiple sequence alignment inference and visualization of phylogenetic trees. Methods for extracting smaller sub-trees from very large phylogenies, and the comparative method of continuous ancestral character state reconstruction based on observed morphology of extant species related to their phylogenetic relationships, are also presented. © 2013 by John Wiley & Sons, Inc.
| Item Type: | Paper |
|---|---|
| Uncontrolled Keywords: | Continuous ancestral character estimation Maximum likelihood Multiple sequence alignment Phylogenetics |
| Subjects: | bioinformatics bioinformatics > genomics and proteomics > genetics & nucleic acid processing bioinformatics > genomics and proteomics educational material |
| CSHL Authors: | |
| Communities: | Dolan DNA Learning Center |
| Depositing User: | Matt Covey |
| Date: | 1 June 2013 |
| Date Deposited: | 20 Sep 2013 14:02 |
| Last Modified: | 20 Sep 2013 14:02 |
| Related URLs: | |
| URI: | https://repository.cshl.edu/id/eprint/28567 |
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