Stein, L. (August 2003) Large scale sequencing. Current Protocols in Bioinformatics. Unit 11.01. ISSN 1934-340X (Electronic)1934-3396 (Linking)
Abstract
DNA sequencing and assembly is the Philosopher's Stone of bioinformatics, where the raw material of wet lab enzymatic chemistry is transformed into the bits and bytes of sequence information. The sequence information becomes the foundation for extensive downstream analyses. This unit provides a brief overview of the sequencing process. It describes several software programs typically used for base calling, assembling, and finishing sequence data such as STADEN, Phred, Phrap, and Consed.
| Item Type: | Paper |
|---|---|
| Subjects: | bioinformatics > genomics and proteomics > alignment bioinformatics > genomics and proteomics > analysis and processing bioinformatics > genomics and proteomics > annotation bioinformatics bioinformatics > genomics and proteomics bioinformatics > genomics and proteomics > Mapping and Rendering bioinformatics > genomics and proteomics > alignment > sequence alignment bioinformatics > genomics and proteomics > annotation > sequence annotation bioinformatics > genomics and proteomics > analysis and processing > Sequence Data Processing bioinformatics > genomics and proteomics > Mapping and Rendering > Sequence Rendering |
| CSHL Authors: | |
| Communities: | CSHL labs > Stein lab |
| Depositing User: | Matt Covey |
| Date: | August 2003 |
| Date Deposited: | 27 Mar 2013 19:01 |
| Last Modified: | 27 Mar 2013 19:01 |
| Related URLs: | |
| URI: | https://repository.cshl.edu/id/eprint/28031 |
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