Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support

Canaran, P., Stein, L. D., Ware, D. H. (April 2006) Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support. Bioinformatics, 22 (7). pp. 885-6. ISSN 1367-4803 (Print)

URL: https://www.ncbi.nlm.nih.gov/pubmed/16473875

DOI: 10.1093/bioinformatics/btl028

Abstract

SUMMARY: We have developed Look-Align, an interactive web-based viewer to display pre-computed multiple sequence alignments. Although initially developed to support the visualization needs of the maize diversity website Panzea (http://www.panzea.org), the viewer is a generic stand-alone tool that can be easily integrated into other websites. AVAILABILITY: Look-Align is written in Perl using open-source components and is available under an open-source license. Live installation and download information can be found at the Panzea website (http://www.panzea.org/software/alignment_viewer.html). CONTACT: ware@cshl.edu SUPPLEMENTARY INFORMATION: The Supplementary information includes sample lists of multiple sequence alignment software and sample screenshots of the viewer.

Item Type:	Paper
Uncontrolled Keywords:	Databases Genetic Polymorphism Genetic Sequence Alignment methods Software User Computer Interface
Subjects:	bioinformatics > genomics and proteomics > databases > database optimization bioinformatics > genomics and proteomics > databases > database search and retrieval bioinformatics > genomics and proteomics > alignment > sequence alignment bioinformatics > genomics and proteomics > annotation > sequence annotation bioinformatics > genomics and proteomics > analysis and processing > Sequence Data Processing bioinformatics > genomics and proteomics > Mapping and Rendering > Sequence Rendering bioinformatics > genomics and proteomics > computers > computer software bioinformatics > genomics and proteomics > databases > databases
CSHL Authors:	Canaran, Payan Stein, Lincoln D. Ware, Doreen H.
Communities:	CSHL labs > Stein lab CSHL labs > Ware lab
Depositing User:	CSHL Librarian
Date:	1 April 2006
Date Deposited:	19 Dec 2011 16:28
Last Modified:	23 Feb 2017 19:34
Related URLs:	Publisher
URI:	https://repository.cshl.edu/id/eprint/22765

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