Items where Subject is "bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > nuclear ribonucleoprotein"

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Number of items at this level: 33.

B

Birney, E., Kumar, S., Krainer, A. R. (December 1993) Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Research, 21 (25). pp. 5803-5816. ISSN 0305-1048

C

Caceres, J. F., Krainer, A. R. (December 1993) Functional analysis of pre-mRNA splicing factor SF2/ASF structural domains. EMBO Journal, 12 (12). pp. 4715-4726. ISSN 0261-4189

Caputi, M., Mayeda, A., Krainer, A. R., Zahler, A. M. (July 1999) hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing. EMBO Journal, 18 (14). pp. 4060-4067. ISSN 0261-4189

Chen, C. D., Kobayashi, R., Helfman, D. M. (March 1999) Binding of hnRNP H to an exonic splicing silencer is involved in the regulation of alternative splicing of the rat beta-tropomyosin gene. Genes and Development, 13 (5). pp. 593-606. ISSN 0890-9369 (Print)

D

Ding, J. Z., Hayashi, M. K., Zhang, Y., Manche, L., Krainer, A. R., Xu, R. M. (May 1999) Crystal structure of the two-RRM domain of hnRNP A1 (UP1) complexed with single-stranded telomeric DNA. Genes & Development, 13 (9). pp. 1102-1115. ISSN 0890-9369

Dirksen, W. P., Li, X. L., Mayeda, A., Krainer, A. R., Rottman, F. M. (September 2000) Mapping the SF2/ASF binding sites in the bovine growth hormone exonic splicing enhancer. Journal of Biological Chemistry, 275 (37). pp. 29170-29177. ISSN 0021-9258

Dong, B. H., Horowitz, D. S., Kobayashi, R., Krainer, A. R. (August 1993) Purification and cDNA cloning of HeLa cell p54nrb, a nuclear protein with two RNA recognition motifs and extensive homology to human splicing factor PSF and Drosophila NONA/BJ6. Nucleic Acids Research, 21 (17). pp. 4085-4092. ISSN 0305-1048

E

Eperon, I. C., Ireland, D. C., Smith, R. A., Mayeda, A., Krainer, A. R. (September 1993) Pathways for selection of 5' splice sites by U1 snRNPs and SF2/ASF. EMBO Journal, 12 (9). pp. 3607-3617. ISSN 0261-4189

Eperon, I. C., Makarova, O. V., Mayeda, A., Munroe, S. H., Caceres, J. F., Hayward, D. G., Krainer, A. R. (November 2000) Selection of alternative 5 ' splice sites: Role of U1 snRNP and models for the antagonistic effects of SF2/ASF and hnRNP A1. Molecular and Cellular Biology, 20 (22). pp. 8303-8318. ISSN 0270-7306

H

Hammell, M., Long, D., Zhang, L., Lee, A., Carmack, C. S., Han, M., Ding, Y., Ambros, V. (September 2008) mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts. Nature Methods, 5 (9). pp. 813-9. ISSN 1548-7091 (Print)1548-7091

Hastings, M. L., Krainer, A. R. (June 2001) Pre-mRNA splicing in the new millennium. Current Opinion in Cell Biology, 13 (3). pp. 302-309. ISSN 0955-0674

Horowitz, D. S., Kobayashi, R., Krainer, A. R. (December 1997) A new cyclophilin and the human homologues of yeast Prp3 and Prp4 form a complex associated with U4/U6 snRNPs. Rna-a Publication of the Rna Society, 3 (12). pp. 1374-1387. ISSN 1355-8382

Hou, V. C., Gee, S. L., Wu, M., Turck, C. W., Koury, M., Krainer, A. R., Mayeda, A., Conboy, J. G. (November 2001) Characterization of a second hnRNP A/B-dependent exonic splicing silencer in protein 4.1R exon 16. Blood, 98 (11). 436A-436A. ISSN 0006-4971

Huang, M., Rech, J. E., Northington, S. J., Flicker, P. F., Mayeda, A., Krainer, A. R., Lestourgeon, W. M. (January 1994) The C-protein tetramer binds 230 to 240 nucleotides of pre-mRNA and nucleates the assembly of 40S heterogeneous nuclear ribonucleoprotein particles. Molecular and Cellular Biology, 14 (1). pp. 518-533. ISSN 0270-7306

I

Ismaili, N., Perez-Morga, D., Walsh, P., Mayeda, A., Pays, A., Tebabi, P., Krainer, A. R., Pays, E. (July 1999) Characterization of a SR protein from Trypanosoma brucei with homology to RNA-binding cis-splicing proteins. Molecular and Biochemical Parasitology, 102 (1). pp. 103-115. ISSN 0166-6851

J

Jokhan, L., Dong, A. P., Mayeda, A., Krainer, A. R., Xu, R. M. (September 1997) Crystallization and preliminary X-ray diffraction studies of UP1, the two-RRM domain of hnRNP A1. Acta Crystallographica Section D-Biological Crystallography, 53. pp. 615-618. ISSN 0907-4449

K

Kaufmann, B. P., Das, N. K. (January 1955) The role of ribonucleoproteins in the production of mitotic abnormalities. Chromosoma, 7 (1). pp. 19-38. ISSN 0009-5915 (Print)0009-5915 (Linking)

Kaufmann, B. P., McDonald, M. R., Gay, H. (November 1948) Enzymatic degradation of ribonucleoproteins of chromosomes, nucleoli and cytoplasm. Nature, 162 (4125). p. 814. ISSN 0028-0836 (Print)0028-0836 (Linking)

Kaufmann, Berwind Petersen, Gay, Helen, McDonald, Margaret R. (April 1951) Enzymatic degradation of ribonucleoproteins. American Journal of Botany, 38 (4). pp. 268-275.

Kaufmann, Berwind Petersen, McDonald, Margaret R., Gay, Helen (November 1948) The ribonucleic acid content of chromosomes. Genetics, 33 (6). p. 615.

Krainer, A. R., Maniatis, T. (October 1985) Multiple factors including the small nuclear ribonucleoproteins U1 and U2 are necessary for pre-mRNA splicing in vitro. Cell, 42 (3). pp. 725-36. ISSN 0092-8674 (Print)0092-8674

L

Lundgren, K., Allan, S., Urushiyama, S., Tani, T., Ohshima, Y., Frendewey, D., Beach, D. (July 1996) A connection between pre-mRNA splicing and the cell cycle in fission yeast: cdc28+ is allelic with prp8+ and encodes an RNA-dependent ATPase/helicase. Molecular Biology of the Cell, 7 (7). pp. 1083-94. ISSN 1059-1524

M

Mayeda, A., Helfman, D. M., Krainer, A. R. (May 1993) Modulation of exon skipping and inclusion by heterogeneous nuclear ribonucleoprotein A1 and pre-mRNA splicing factor SF2/ASF. Molecular and Cellular Biology, 13 (5). pp. 2993-3001. ISSN 0270-7306 (Print)0270-7306

Mayeda, A., Krainer, A. R. (January 1992) Regulation of alternative pre-mRNA splicing by hnRNP A1 and splicing factor SF2. Cell, 68 (2). pp. 365-75. ISSN 0092-8674 (Print)0092-8674

Mayeda, A., Munroe, S. H., Caceres, J. F., Krainer, A. R. (November 1994) Function of conserved domains of hnRNP A1 and other hnRNP A/B proteins. EMBO Journal, 13 (22). pp. 5483-5495. ISSN 0261-4189

Mertens, C., Hofmann, I., Wang, Z. X., Teichmann, M., Chong, S. S., Schnolzer, M., Franke, W. W. (July 2001) Nuclear particles containing RNA polymerase III complexes associated with the junctional plaque protein plakophilin 2. Proceedings of the National Academy of Sciences of the United States of America, 98 (14). pp. 7795-7800. ISSN 0027-8424

Mital, R., Kobayashi, R., Hernandez, N. (December 1996) RNA polymerase III transcription from the human U6 and adenovirus type 2 VAI promoters has different requirements for human BRF, a subunit of human TFIIIB. Molecular and Cellular Biology, 16 (12). pp. 7031-42. ISSN 0270-7306

Mizzen, L. A., Welch, W. J. (April 1988) Characterization of the thermotolerant cell. I. Effects on protein synthesis activity and the regulation of heat-shock protein 70 expression. J Cell Biol, 106 (4). pp. 1105-16. ISSN 0021-9525

P

Pollard, A. J., Krainer, A. R., Robson, S. C., Europe-Finner, G. N. (May 2002) Alternative splicing of the adenylyl cyclase stimulatory G-protein G alpha(s) is regulated by SF2/ASF and heterogeneous nuclear ribonucleoprotein A1 (hnRNPA1) and involves the use of an unusual TG 3'-splice Site. Journal of Biological Chemistry, 277 (18). pp. 15241-51. ISSN 0021-9258 (Print)0021-9258

Pollard, A. J., Sparey, C., Robson, S. C., Krainer, A. R., Europe-Finner, G. N. (May 2000) Spatio-temporal expression of the trans-acting splicing factors SF2/ASF and heterogeneous ribonuclear proteins A1/A1(B) in the myometrium of the pregnant human uterus: A molecular mechanism for regulating regional protein isoform expression in vivo. Journal of Clinical Endocrinology & Metabolism, 85 (5). pp. 1928-1936. ISSN 0021-972X

S

Sadowski, C. L., Henry, R. W., Kobayashi, R., Hernandez, N. (April 1996) The SNAP45 subunit of the small nuclear RNA (snRNA) activating protein complex is required for RNA polymerase II and III snRNA gene transcription and interacts with the TATA box binding protein. Proceedings of the National Academy of Sciences, 93 (9). pp. 4289-93. ISSN 0027-8424 (Print)

V

van Oordt, W. V., Diaz-Meco, M. T., Lozano, J., Krainer, A. R., Moscat, J., Caceres, J. F. (April 2000) The MKK3/6-p38-signaling cascade alters the subcellular distribution of hnRNP A1 and modulates alternative splicing regulation. Journal of Cell Biology, 149 (2). pp. 307-316. ISSN 0021-9525

Z

Zhu, J., Mayeda, A., Krainer, A. R. (December 2001) Exon identity established through differential antagonism between exonic splicing silencer-bound hnRNP A1 and enhancer-bound SR proteins. Molecular Cell, 8 (6). pp. 1351-1361. ISSN 1097-2765

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