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Voss, Dillon M, Kral, Alexander J, Sim, GeunYoung, Utama, Raditya, Lin, Kuan-Ting, Cizmeciyan, Chris, Schafer, Balazs, Cunniff, Patrick J, Vakoc, Christopher R, Caruthers, Marvin H, Mishra, Lopa, Krainer, Adrian R (February 2025) PKM splice-switching ASOs induce upregulation of dual-specificity phosphatases and dephosphorylation of ERK1/2 in hepatocellular carcinoma. Journal of Biological Chemistry. p. 108345. ISSN 0021-9258

Hazra, Rasmani, Utama, Raditya, Naik, Payal, Dobin, Alexander, Spector, David L (October 2023) Identification of glioblastoma stem cell-associated lncRNAs using single-cell RNA sequencing datasets. Stem Cell Reports. ISSN 2213-6711

Hegelmeyer, Nuri K, Parkin, Lia A, Previti, Mary L, Andrade, Joshua, Utama, Raditya, Sejour, Richard J, Gardin, Justin, Muller, Stephanie, Ketchum, Steven, Yurovsky, Alisa, Futcher, Bruce, Goodwin, Sara, Ueberheide, Beatrix, Seeliger, Jessica C (October 2023) Gene recoding by synonymous mutations creates promiscuous intragenic transcription initiation in mycobacteria. mBio. e0084123. ISSN 2150-7511

Sroka, Martyna W, Skopelitis, Damianos, Vermunt, Marit W, Preall, Jonathan B, El Demerdash, Osama, de Almeida, Larissa MN, Chang, Kenneth, Utama, Raditya, Gryder, Berkley, Caligiuri, Giuseppina, Ren, Diqiu, Nalbant, Benan, Milazzo, Joseph P, Tuveson, David A, Dobin, Alexander, Hiebert, Scott W, Stengel, Kristy R, Mantovani, Roberto, Khan, Javed, Kohli, Rahul M, Shi, Junwei, Blobel, Gerd A, Vakoc, Christopher R (September 2023) Myo-differentiation reporter screen reveals NF-Y as an activator of PAX3-FOXO1 in rhabdomyosarcoma. Proceedings of the National Academy of Sciences of USA, 120 (36). e2303859120. ISSN 0027-8424 (Public Dataset)

Hegelmeyer, Nuri K, Previti, Mary L, Andrade, Joshua, Utama, Raditya, Sejour, Richard J, Gardin, Justin, Muller, Stephanie, Ketchum, Steven, Yurovsky, Alisa, Futcher, Bruce, Goodwin, Sara, Ueberheide, Beatrix, Seeliger, Jessica C (March 2023) Gene recoding by synonymous mutations creates promiscuous intragenic transcription initiation in mycobacteria. bioRxiv. (Submitted)

Hazra, Rasmani, Utama, Raditya, Naik, Payal, Dobin, Alexander, Spector, David L (January 2023) Identification of glioblastoma stem cell-associated lncRNAs using single-cell RNA-sequencing datasets. bioRxiv. (Submitted)

Utama, Raditya, Bastian, Anja, Sadagopan, Narayanan, Jin, Ying, Antoniou, Eric, Gao, Qing, Huang, Yinghui J, Gopalakrishna-Pillai, Sailesh, Lee, Peter P, Atwal, Gurinder S (February 2019) Cell non-autonomous interactions during non-immune stromal progression in the breast tumor microenvironment. BioRxiv. (Unpublished)

Utama, R., Bastian, A., Sadagopan, N., Jin, Y., Antoniou, E., Huang, Y., Lee, P., Atwal, G. (July 2018) Transcriptional landscape of stroma progression in the breast tumor microenvironment. Cancer Research, 78 (13 S). meeting abstract : LB-357. ISSN 0008-5472

Utama, R., Piekarewicz, J. (January 2018) Validating neural-network refinements of nuclear mass models. Physical Review C, 97 (1). article no. 014306.