Browse by CSHL Author

Xu, Xiaosa, Passalacqua, Michael, Rice, Brian, Demesa-Arevalo, Edgar, Kojima, Mikiko, Takebayashi, Yumiko, Yu, Xingyao, Harris, Benjamin, Liu, Yuchen, Gallavotti, Andrea, Sakakibara, Hitoshi, Gillis, Jesse, Jackson, David (August 2025) Large-scale single-cell profiling of stem cells identifies redundant regulators of shoot development and yield trait variation. Developmental Cell. S1534-5807(25)00500. ISSN 1534-5807

Harris, Benjamin D (October 2021) Atlas level scRNAseq analysis reveals the functional landscape of cell types. PhD thesis, Cold Spring Harbor Laboratory.

Harris, Benjamin, Lee, John, Gillis, Jesse (August 2021) A Meta-Analytic Single-Cell Atlas of Mouse Bone Marrow Hematopoietic Development. bioRxiv. (Unpublished)

Fischer, Stephan, Crow, Megan, Harris, Benjamin D, Gillis, Jesse (July 2021) Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor. Nature Protocols. ISSN 1754-2189

Harris, Benjamin D, Crow, Megan, Fischer, Stephan, Gillis, Jesse (May 2021) Single-cell co-expression analysis reveals that transcriptional modules are shared across cell types in the brain. Cell Systems. ISSN 2405-4712

Xu, X., Crow, M., Rice, B. R., Li, F., Harris, B., Liu, L., Demesa-Arevalo, E., Lu, Z., Wang, L., Fox, N., Wang, X., Drenkow, J., Luo, A., Char, S. N., Yang, B., Sylvester, A. W., Gingeras, T. R., Schmitz, R. J., Ware, D., Lipka, A. E., Gillis, J., Jackson, D. (December 2020) Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery. Dev Cell, S1534- (20). pp. 31021-31022. ISSN 1534-5807