Wang, L., Van Buren, P., Ware, D. (March 2016) Architecting a distributed bioinformatics platform with iRODS and iPlant agave API. 2015 International Conference on Computational Science and Computational Intelligence (CSCI). pp. 420-423.
Abstract
Over the past few years, cloud-based platforms have been proposed to address storage, management, and computation of large-scale data, especially in the field of genomics. However, for collaboration efforts involving multiple institutes, data transfer and management, interoperability and standardization among different platforms have imposed new challenges. This paper proposes a distributed bioinformatics platform that can leverage local clusters with remote computational clusters for genomic analysis using the unified bioinformatics workflow. The platform is built with a data server configured with iRODS, a computation cluster authenticated with iPlant Agave system, and web server to interact with the platform. A Genome-Wide Association Study workflow is integrated to validate the feasibility of the proposed approach. © 2015 IEEE.
| Item Type: | Paper |
|---|---|
| Additional Information: | Meeting Abstract |
| Uncontrolled Keywords: | Agave API Big data Bioinformatics Cloud computing Data analysis Data storage IPlant |
| Subjects: | bioinformatics bioinformatics > computational biology bioinformatics > genomics and proteomics > computers > computer hardware bioinformatics > genomics and proteomics > computers > computer software Publication Type > Meeting Abstract |
| CSHL Authors: | |
| Communities: | CSHL labs > Ware lab |
| Depositing User: | Matt Covey |
| Date: | 2 March 2016 |
| Date Deposited: | 09 May 2016 18:58 |
| Last Modified: | 01 Feb 2018 16:49 |
| URI: | https://repository.cshl.edu/id/eprint/32781 |
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