WormBase: a comprehensive data resource for Caenorhabditis biology and genomics

Chen, N., Harris, T. W., Antoshechkin, I., Bastiani, C., Bieri, T., Blasiar, D., Bradnam, K., Canaran, P., Chan, J., Chen, C.-K., Chen, W. J., Cunningham, F., Davis, P., Kenny, E., Kishore, Ra.., Lawson, D., Lee, R., Muller, H. M., Nakamura, Ce., Pai, S., Ozersky, P., Petcherski, A., Rogers, An., Sabo, A., Schwarz, Er. M., Van Auken, K., Wang, Q., Durbin, R., Spieth, J., Sternberg, P. W., Stein, L. D. (January 2005) WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. Nucleic Acids Res, 33 (Databa). D383-9. ISSN 1362-4962 (Electronic)

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URL: http://www.ncbi.nlm.nih.gov/pubmed/15608221
DOI: 10.1093/nar/gki066

Abstract

WormBase (http://www.wormbase.org), the model organism database for information about Caenorhabditis elegans and related nematodes, continues to expand in breadth and depth. Over the past year, WormBase has added multiple large-scale datasets including SAGE, interactome, 3D protein structure datasets and NCBI KOGs. To accommodate this growth, the International WormBase Consortium has improved the user interface by adding new features to aid in navigation, visualization of large-scale datasets, advanced searching and data mining. Internally, we have restructured the database models to rationalize the representation of genes and to prepare the system to accept the genome sequences of three additional Caenorhabditis species over the coming year.

Item Type: Paper
Uncontrolled Keywords: Animals Caenorhabditis genetics metabolism Caenorhabditis elegans genetics/metabolism Caenorhabditis elegans Proteins chemistry genetics/metabolism Databases Genetic trends Gene Expression Profiling Genomics Protein Conformation Software Systems Integration Two-Hybrid System Techniques User-Computer Interface
Subjects: organism description > animal > C elegans
bioinformatics > genomics and proteomics > databases > database construction
bioinformatics > genomics and proteomics > databases > database optimization
bioinformatics > genomics and proteomics > databases > databases
CSHL Authors:
Communities: CSHL labs > Stein lab
Watson School > Publications
Depositing User: CSHL Librarian
Date: 1 January 2005
Date Deposited: 13 Jan 2012 19:54
Last Modified: 19 Sep 2014 15:40
Related URLs:
URI: http://repository.cshl.edu/id/eprint/22545

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