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Ernst, Evan, Abramson, Bradley, Acosta, Kenneth, Hoang, Phuong TN, Mateo-Elizalde, Cristian, Schubert, Veit, Pasaribu, Buntora, Albert, Patrice S, Hartwick, Nolan, Colt, Kelly, Aylward, Anthony, Ramu, Umamaheswari, Birchler, James A, Schubert, Ingo, Lam, Eric, Michael, Todd P, Martienssen, Robert A (March 2025) Duckweed genomes and epigenomes underlie triploid hybridization and clonal reproduction. Current Biology. ISSN 0960-9822 (Public Dataset)

Cahn, Jonathan, Regulski, Michael, Lynn, Jason, Ernst, Evan, de Santis Alves, Cristiane, Ramakrishnan, Srividya, Chougule, Kapeel, Wei, Sharon, Lu, Zhenyuan, Xu, Xiaosa, Ramu, Umamaheswari, Drenkow, Jorg, Kramer, Melissa, Seetharam, Arun, Hufford, Matthew B, McCombie, W Richard, Ware, Doreen, Jackson, David, Schatz, Michael C, Gingeras, Thomas R, Martienssen, Robert A (December 2024) MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication. Nature Communications, 15 (1). p. 10854. ISSN 2041-1723 (Public Dataset)

Shimada, Atsushi, Cahn, Jonathan, Ernst, Evan, Lynn, Jason, Grimanelli, Daniel, Henderson, Ian, Kakutani, Tetsuji, Martienssen, Robert A (September 2024) Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs. Nature Plants. ISSN 2055-0278 (Public Dataset)

de Oliveira, Beatriz Cristina Dias, Shiburah, Mark Ewusi, Assis, Luiz Henrique Castro, Fontes, Veronica Silva, Bisetegn, Habtye, de Oliveira Passos, Arthur, de Oliveira, Leilane S, de Santis Alves, Cristiane, Ernst, Evan, Martienssen, Rob, Gallo-Francisco, Pedro Henrique, Giorgio, Selma, Batista, Marcos Meuser, de Nazaré Correia Soeiro, Maria, Menna-Barreto, Rubem Figueiredo Sadok, Aoki, Juliana Ide, Coelho, Adriano Cappellazzo, Cano, Maria Isabel Nogueira (August 2024) Leishmania major telomerase RNA knockout: From altered cell proliferation to decreased parasite infectivity. International Journal of Biological Macromolecules. p. 135150. ISSN 0141-8130

Berube, Benjamin, Ernst, Evan, Cahn, Jonathan, Roche, Benjamin, de Santis Alves, Cristiane, Lynn, Jason, Scheben, Armin, Grimanelli, Daniel, Siepel, Adam, Ross-Ibarra, Jeffrey, Kermicle, Jerry, Martienssen, Robert A (August 2024) Teosinte Pollen Drive guides maize diversification and domestication by RNAi. Nature. ISSN 0028-0836 (Public Dataset)

Cahn, Jonathan, Regulski, Michael, Lynn, Jason, Ernst, Evan, Alves, Cristiane de Santis, Ramakrishnan, Srividya, Chougule, Kapeel, Wei, Sharon, Lu, Zhenyuan, Xu, Xiaosa, Drenkow, Jorg, Kramer, Melissa, Seetharam, Arun, Hufford, Matthew, McCombie, Richard, Ware, Doreen, Jackson, David, Schatz, Michael, Gingeras, Thomas, Martienssen, Robert (February 2024) MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication. bioRxiv. (Submitted)

Shi, Hai, Ernst, Evan, Heinzel, Nicolas, McCorkle, Sean, Rolletschek, Hardy, Borisjuk, Ljudmilla, Ortleb, Stefan, Martienssen, Robert, Shanklin, John, Schwender, Jorg (October 2023) Mechanisms of metabolic adaptation in the duckweed Lemna gibba: an integrated metabolic, transcriptomic and flux analysis. BMC Plant Biology, 23 (1). p. 458. ISSN 1471-2229 (Public Dataset)

Shimada, Atsushi, Cahn, Jonathan, Ernst, Evan, Lynn, Jason, Grimanelli, Daniel, Henderson, Ian, Kakutani, Tetsuji, Martienssen, Robert A (August 2023) Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs. (Public Dataset) (Submitted)

Berube, Benjamin, Ernst, Evan, Cahn, Jonathan, Roche, Benjamin, de Santis Alves, Cristiane, Lynn, Jason, Scheben, Armin, Siepel, Adam, Ross-Ibarra, Jeffrey, Kermicle, Jerry, Martienssen, Robert A (August 2023) Teosinte Pollen Drive guides maize domestication and evolution by RNAi. bioRxiv. (Public Dataset) (Submitted)

Mateo-Elizalde, Cristian, Lynn, Jason, Ernst, Evan, Martienssen, Rob (February 2023) Duckweeds. Current Biology, 33 (3). R89-R91. ISSN 0960-9822

Liang, Yuanxue, Yu, Xiao‐Hong, Anaokar, Sanket, Shi, Hai, Dahl, William B, Cai, Yingqi, Luo, Guangbin, Chai, Jin, Cai, Yuanheng, Mollá‐Morales, Almudena, Altpeter, Fredy, Ernst, Evan, Schwender, Jorg, Martienssen, Robert A, Shanklin, John (October 2022) Engineering Triacylglycerol Accumulation in Duckweed (Lemna japonica). Plant Biotechnology Journal. ISSN 1467-7644

Michael, Todd P, Ernst, Evan, Hartwick, Nolan, Chu, Philomena, Bryant, Douglas, Gilbert, Sarah, Ortleb, Stefan, Baggs, Erin L, Sree, K Sowjanya, Appenroth, Klaus J, Fuchs, Joerg, Jupe, Florian, Sandoval, Justin P, Krasileva, Ksenia V, Borisjuk, Ljudmylla, Mockler, Todd C, Ecker, Joseph R, Martienssen, Robert A, Lam, Eric (December 2020) Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. Genome Research, 31 (2). pp. 225-238. ISSN 1088-9051

Lee, S.C., Ernst, E., Berube, B., Borges, F., Parent, J. S., Ledon, P., Schorn, A., Martienssen, R. A. (April 2020) Arabidopsis Retrotransposon Virus-Like Particles and Their Regulation by Epigenetically Activated Small RNA. Genome Research, 30 (4). pp. 576-588. ISSN 1088-9051

Chang, An-Yun, Castel, Stephane E., Ernst, Evan, Kim, Hyun Soo, Martienssen, Robert A. (June 2017) The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly. Cell Reports, 19 (12). pp. 2477-2489. ISSN 2211-1247

Yan, Yiheng, Candreva, Jason, Shi, Hai, Ernst, Evan, Martienssen, Robert, Schwender, Jorg, Shanklin, John (December 2013) Survey of the total fatty acid and triacylglycerol composition and content of 30 duckweed species and cloning of a Delta 6-desaturase responsible for the production of gamma-linolenic and stearidonic acids in Lemna gibba. BMC Plant Biology, 13. ISSN 1471-2229