Additional materials of the author at
CSHL Institutional Repository

Szadai, Zoltán, Pi, Hyun-Jae, Chevy, Quentin, Ócsai, Katalin, Albeanu, Dinu F, Chiovini, Balázs, Szalay, Gergely, Katona, Gergely, Kepecs, Adam , Rózsa, Balázs (2022) Cortex-wide response mode of VIP-expressing inhibitory neurons by reward and punishment. eLife, 11 pp. e78815.

Redish, A David, Kepecs, Adam, Anderson, Lisa M, Calvin, Olivia L, Grissom, Nicola M, Haynos, Ann F, Heilbronner, Sarah R, Herman, Alexander B, Jacob, Suma, Ma, Sisi, Vilares, Iris, Vinogradov, Sophia, Walters, Cody J, Widge, Alik S, Zick, Jennifer L , Zilverstand, Anna (2022) Computational validity: using computation to translate behaviours across species. Philosophical Transactions of the Royal Society B: Biological Sciences, 377(1844) pp. 20200525.

Schmack, Katharina, Ott, Torben , Kepecs, Adam (2021) Computational Psychiatry Across Species to Study the Biology of Hallucinations.. JAMA Psychiatry,

Joo, Hannah R, Liang, Hexin, Chung, Jason E, Geaghan-Breiner, Charlotte, Fan, Jiang Lan, Nachman, Benjamin P, Kepecs, Adam , Frank, Loren M (2021) Rats use memory confidence to guide decisions.. Current Biology,

Schmack, K, Bosc, M, Ott, T, Sturgill, JF , Kepecs, A (2021) Striatal dopamine mediates hallucination-like perception in mice.. Science, 372(6537) pp. eabf4740-eabf4740.

Laszlovszky, T., Schlingloff, D., Hegedüs, P., Freund, T. F., Gulyás, A., Kepecs, A. , Hangya, B. (2020) Publisher Correction: Distinct synchronization, cortical coupling and behavioral function of two basal forebrain cholinergic neuron types. Nat Neurosci,

Browning, Michael, Carter, Cameron S, Chatham, Christopher, Den Ouden, Hanneke, Gillan, Claire M, Baker, Justin T, Chekroud, Adam M, Cools, Roshan, Dayan, Peter, Gold, James, Goldstein, Rita Z, Hartley, Catherine A, Kepecs, Adam, Lawson, Rebecca P, Mourao-Miranda, Janaina, Phillips, Mary L, Pizzagalli, Diego A, Powers, Albert, Rindskopf, David, Roiser, Jonathan P, Schmack, Katharina, Schiller, Daniela, Sebold, Miriam, Stephan, Klaas Enno, Frank, Michael J, Huys, Quentin , Paulus, Martin (2020) Realizing the Clinical Potential of Computational Psychiatry: Report From the Banbury Center Meeting, February 2019.. Biological Psychiatry, 88(2) pp. e5-e10.

Laszlovszky, T, Schlingloff, D, Hegedüs, P, Freund, T. F., Gulyás, A., Kepecs, A. , Hangya, B. (2020) Distinct Synchronization, Cortical Coupling and Behavioral Function of Two Basal Forebrain Cholinergic Neuron Types. Nature Neuroscience, 23(8) pp. 992-1003. Nature.

Masset, P., Ott, T., Lak, A., Hirokawa, J. , Kepecs, A. (2020) Behavior- And Modality-General Representation of Confidence in Orbitofrontal Cortex. Cell, 182

Monje, M., Borniger, J., D'Silva, N.J., Deneen, B., Dirks, P.B., Fattahi, F., Frenette, P.S., Garzia, L., Gutmann, D.H., Hanahan, D., Hervey-Jumper, S.L., Hondermarck, H., Hurov, J.B., Kepecs, A., Knox, S.M., Lloyd, A.C., Magnon, C., Saloman, J.L., Segal, R.A., Sloan, E.K., Sun, X., Taylor, M.D., Tracey, K.J., Trotman, L. C., Tuveson, D. A., Wang, T.C., White, R.A. , Winkler, F. (2020) Roadmap for the Emerging Field of Cancer Neuroscience. Cell, 181(2) pp. 219-222.

Lak, A., Hueske, E., Hirokawa, J., Masset, P., Ott, T., Urai, A. E., Donner, T.H., Carandini, M., Tonegawa, S., Uchida, N. , Kepecs, A. (2020) Reinforcement Biases Subsequent Perceptual Decisions When Confidence Is Low: A Widespread Behavioral Phenomenon. Elife, 9(e49834)

Mohanty, A., Li, Q., Tadayon, M. A., Roberts, S. P., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. , Lipson, M. (2020) Reconfigurable nanophotonic silicon probes for sub-millisecond deep-brain optical stimulation. Nat Biomed Eng, 4(2) pp. 223-231.

Demir, E., Li, K., Bobrowski-Khoury, N., Sanders, J. I., Beynon, R. J., Hurst, J. L., Kepecs, A. , Axel, R. (2020) The pheromone darcin drives a circuit for innate and reinforced behaviours. Nature, 578(7793) pp. 137-141.

Lak, A., Okun, M., Moss, M. M., Gurnani, H., Farrell, K., Wells, M. J., Reddy, C. B., Kepecs, A., Harris, K. D. , Carandini, M. (2019) Dopaminergic and Prefrontal Basis of Learning from Sensory Confidence and Reward Value. Neuron,

Hirokawa, J., Vaughan, A., Masset, P., Ott, T. , Kepecs, A. (2019) Frontal cortex neuron types categorically encode single decision variables. Nature, 576(7787) pp. 446-451.

Richards, B. A., Lillicrap, T. P., Beaudoin, P., Bengio, Y., Bogacz, R., Christensen, A., Clopath, C., Costa, R. P., de Berker, A., Ganguli, S., Gillon, C. J., Hafner, D., Kepecs, A., Kriegeskorte, N., Latham, P., Lindsay, G. W., Miller, K. D., Naud, R., Pack, C. C., Poirazi, P., Roelfsema, P., Sacramento, J., Saxe, A., Scellier, B., Schapiro, A. C., Senn, W., Wayne, G., Yamins, D., Zenke, F., Zylberberg, J., Therien, D. , Kording, K. P. (2019) A deep learning framework for neuroscience. Nat Neurosci, 22(11) pp. 1761-1770.

Kepecs, A. (2019) Summary: Order and Disorder in Brains and Behavior. Cold Spring Harb Symp Quant Biol, 83 pp. 219-225.

Fishell, G. , Kepecs, A. (2019) Interneuron Types as Attractors and Controllers. Annu Rev Neurosci,

Ott, T., Masset, P. , Kepecs, A. (2018) The Neurobiology of Confidence: From Beliefs to Neurons. Cold Spring Harb Symp Quant Biol, 83 pp. 9-16.

Li, S. J., Vaughan, A., Sturgill, J. F. , Kepecs, A. (2018) A Viral Receptor Complementation Strategy to Overcome CAV-2 Tropism for Efficient Retrograde Targeting of Neurons. Neuron, 98(5) pp. 905-917 e.5.

Chevy, Q. , Kepecs, A. (2018) When Acetylcholine Unlocks Feedback Inhibition in Cortex. Neuron, 97(3) pp. 481-484.

Kepecs, A. (2018) John Lisman 1944-2017. Nat Neurosci,

Lak, A., Nomoto, K., Keramati, M., Sakagami, M. , Kepecs, A. (2017) Midbrain Dopamine Neurons Signal Belief in Choice Accuracy during a Perceptual Decision. Curr Biol, 27(6) pp. 821-832.

Hangya, B., Sanders, J. L. , Kepecs, A. (2016) A Mathematical Framework for Statistical Decision Confidence. Neural Comput, 28(9) pp. 1840-1858.

Sanders, Joshua I, Hangya, Balázs , Kepecs, Adam (2016) Signatures of a Statistical Computation in the Human Sense of Confidence. Neuron, 90(3) pp. 499-506.

Kobak, D., Brendel, W., Constantinidis, C., Feierstein, C. E., Kepecs, A., Mainen, Z. F., Romo, R., Qi, X. L., Uchida, N. , Machens, C. K. (2016) Demixed principal component analysis of neural population data. Elife, 5

Pouget, A., Drugowitsch, J. , Kepecs, A. (2016) Confidence and certainty: distinct probabilistic quantities for different goals. Nat Neurosci, 19(3) pp. 366-74.

Kepecs, A. , Mensh, B. D. (2015) Emotor control: computations underlying bodily resource allocation, emotions, and confidence. Dialogues Clin Neurosci, 17(4) pp. 391-401.

Lin, S. C., Brown, R. E., Hussain Shuler, M. G., Petersen, C. C. , Kepecs, A. (2015) Optogenetic Dissection of the Basal Forebrain Neuromodulatory Control of Cortical Activation, Plasticity, and Cognition. J Neurosci, 35(41) pp. 13896-903.

Hangya, Balázs, Ranade, Sachin P, Lorenc, Maja , Kepecs, Adam (2015) Central Cholinergic Neurons Are Rapidly Recruited by Reinforcement Feedback. Cell, 162(5) pp. 1155-1168.

Hangya, Balázs , Kepecs, Adam (2015) Vision: How to Train Visual Cortex to Predict Reward Time. Current Biology, 25(12) pp. R490-R492.

Sanders, J. I. , Kepecs, A. (2014) A low-cost programmable pulse generator for physiology and behavior. Frontiers in Neuroengineering, 7(43)

Takada, N., Pi, H. J., Sousa, V. H., Waters, J., Fishell, G., Kepecs, A. , Osten, P. (2014) A developmental cell-type switch in cortical interneurons leads to a selective defect in cortical oscillations. Nature Communications, 5 pp. 5333.

Lak, A., Costa, G. M., Romberg, E., Koulakov, A. A., Mainen, Z. F. , Kepecs, A. (2014) Orbitofrontal Cortex Is Required for Optimal Waiting Based on Decision Confidence. Neuron, 84(1) pp. 190-201.

Ranade, S., Pi, H.J. , Kepecs, A. (2014) Neuroscience: Waiting for Serotonin. Current Biology, 24(17) pp. R803-R805.

Hangya, B., Pi, H. J., Kvitsiani, D., Ranade, S. P. , Kepecs, A. (2014) From circuit motifs to computations: mapping the behavioral repertoire of cortical interneurons. Current Opinion in Neurobiology, 26c pp. 117-124.

Kepecs, A. , Fishell, G. (2014) Interneuron cell types are fit to function. Nature, 505(7483) pp. 318-326.

Pi, H. J., Hangya, B., Kvitsiani, D., Sanders, J. I., Huang, Z. J. , Kepecs, A. (2013) Cortical interneurons that specialize in disinhibitory control. Nature, 503 pp. 521-24.

Kepecs, A. (2013) The uncertainty of it all. Nature Neuroscience, 16(6) pp. 660-2.

Kvitsiani, D., Ranade, S., Hangya, B., Taniguchi, H., Huang, J. Z. , Kepecs, A. (2013) Distinct behavioural and network correlates of two interneuron types in prefrontal cortex. Nature, 498(7454) pp. 363-366.

Ranade, S., Hangya, B. , Kepecs, A. (2013) Multiple Modes of Phase Locking between Sniffing and Whisking during Active Exploration. Journal of Neuroscience, 33(19) pp. 8250-6.

Zariwala, H. A., Kepecs, A., Uchida, N., Hirokawa, J. , Mainen, Z. F. (2013) The Limits of Deliberation in a Perceptual Decision Task. Neuron, 78(2) pp. 339-51.

Sanders, J. I. , Kepecs, A. (2012) Choice ball: A response interface for two-choice psychometric discrimination in head-fixed mice. Journal of Neurophysiology, 108(12) pp. 3416-3423.

Kepecs, A. , Mainen, Z. F. (2012) A computational framework for the study of confidence in humans and animals. Philos Trans R Soc Lond B Biol Sci, 367(1594) pp. 1322-37.

Kepecs, A. (2011) Neuroscience: My brain made me do it. Nature, 473(7347) pp. 280-281.

Poeppel, D., Brown, M., Solomon, S., Coyne, J. A., Wang, M.-W., Zittrain, J., Zimmer, C., Frankel, F., Rienhoff, H. Y., Hood, B., Shubin, N., Scott, E., Knapp, S. , Kepecs, A. (2009) A break from the bench. Nature, 460(7255) pp. 574-577.

Kepecs, Adam (2009) Decisions, decisions. Nature, 458(7240) pp. 835-835.

Mainen, Z. F. , Kepecs, A. (2009) Neural representation of behavioral outcomes in the orbitofrontal cortex. Current Opinion in Neurobiology, 19(1) pp. 84-91.

Kepecs, A., Uchida, N., Zariwala, H. A. , Mainen, Z. F. (2008) Neural correlates, computation and behavioural impact of decision confidence. Nature, 455(7210) pp. 227-31.

Goodhill, G., Baker, C., Balasubramanian, V., Bazhenov, M., Beck, J., Becker, S., Bethge, M., Boahen, K., Boden, M., Bonin, V., Bouret, S., Fairhall, A., Flash, T., French, R., Gillies, A., Gollisch, T., Gurney, K., Gutkin, B., Hayhoe, M., Hunt, J., Ibbotson, M., Kepecs, A., Kingdom, F., Kropff, E., Longden, K., Marder, E., Miikkulainen, R., Oliva, A., Olshausen, B., Pillow, J., Prenger, R., Redish, D., Rolls, E., Rucci, M., Breakspear, M., Bressloff, P., Bulthoff, H., Burgess, N., Burkitt, A., Butts, D., Carreira-Perpinan, M., Chklovskii, D., Eden, U., Ermentrout, B., Schmidhuber, J., Semyanov, A., Sharpee, T., Smith, A., Sommer, F., Srinivasan, M., Stanley, G., Stopfer, M., Tanaka, H., Theunissen, F., Tranchina, D., Treves, A., Van Ooyen, A., Verschure, P., Vorobyev, M., Wachtler, T., Wallis, G., Willmore, B., Wiskott, L., Wyeth, G., Zanker, J., Zetzsche, C. , Zhaoping, L. (2008) Network: Computation in Neural Systems: Editorial. Network: Computation in Neural Systems, 19(1) pp. 1-2.

Kepecs, A., Uchida, N. , Mainen, Z. F. (2007) Rapid and Precise Control of Sniffing during Olfactory Discrimination in Rats. J Neurophysiol, 98(1) pp. 205-213.

Kepecs, A. , Raghavachari, S. (2007) Gating information by two-state membrane potential fluctuations. J Neurophysiol, 97(4) pp. 3015-23.

Uchida, N., Kepecs, A. , Mainen, Z. F. (2006) Seeing at a glance, smelling in a whiff: rapid forms of perceptual decision making. Nature Reviews Neuroscience, 7(6) pp. 485-91.

Kepecs, A., Uchida, N. , Mainen, Z . F. (2006) The sniff as a unit of olfactory processing. Chem Senses, 31(2) pp. 167-79.

Kepecs, A. , Lisman, J. (2004) How to read a burst duration code. Neurocomputing, 58-60 pp. 1-6.

Kepecs, A. , Lisman, J. (2003) Information encoding and computation with spikes and bursts. Network, 14(1) pp. 103-18.

Brody, C. D., Romo, R. , Kepecs, A. (2003) Basic mechanisms for graded persistent activity: Discrete attractors, continuous attractors, and dynamic representations. Current Opinion in Neurobiology, 13(2) pp. 204-211.

Kepecs, A., Van Rossum, M. C. W., Song, S. , Tegner, J. (2002) Spike-timing-dependent plasticity: Common themes and divergent vistas. Biological Cybernetics, 87(5-6) pp. 446-458.

Kepecs, A., Wang, X. J. , Lisman, J. (2002) Bursting neurons signal input slope. Journal of Neuroscience, 22(20) pp. 9053-9062.

Koulakov, A. A., Raghavachari, S., Kepecs, A. , Lisman, J. E. (2002) Model for a robust neural integrator. Nature Neuroscience, 5(8) pp. 775-782.

Tegnér, J. , Kepecs, A. (2002) An adaptive spike-timing-dependent plasticity rule. Neurocomputing, 44-46 pp. 189-194.

Kepecs, A. , Wang, X. J. (2000) Analysis of complex bursting in cortical pyramidal neuron models. Neurocomputing, 32-33 pp. 181-187.

Bazsó, F., Kepecs, Á, Lengyel, M., Payrits, S., Szalisznyó, K., Zalányi, L. , Érdi, P. (1999) Single cell and population activities in cortical-like systems. Reviews in the Neurosciences, 10(3-4) pp. 201-212.

Lengyel, M., Kepecs, Á , Érdi, P. (1999) Location-dependent differences between somatic and dendritic IPSPs. Neurocomputing, 26-27 pp. 193-197.

Adorjan, P., Barna, G., Erdi, P., Grobler, T., Kepecs, A., Lengyel, M. , Ventriglia, F. (1996) Multicompartmental modeling of hippocampal pyramidal cells and interneurons with the GENESIS software tool. Neurobiology, 4(3) pp. 247-249.