Additional materials of the author at
CSHL Institutional Repository

Musall, Simon, Sun, Xiaonan R, Mohan, Hemanth, An, Xu, Gluf, Steven, Li, Shu-Jing, Drewes, Rhonda, Cravo, Emma, Lenzi, Irene, Yin, Chaoqun, Kampa, Björn M , Churchland, Anne K (2023) Pyramidal cell types drive functionally distinct cortical activity patterns during decision-making. Nature Neuroscience,

International Brain Laboratory, , Aguillon, Valeria, Angelaki, Dora E, Bayer, Hannah, Bonacchi, Niccolo, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne K, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Ines, Mainen, Zachary F, Meijer, Guido, Miska, Nathaniel, Mrsic-Flogel, Thomas D, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Rossant, Cyrille, Sanders, Joshua, Socha, Karolina, Terry, Rebecca, Urai, Anne E, Vergara, Hernando, Wells, Miles, Wilson, Christian, Witten, Ilana B, Wool, Lauren , Zador, Anthony M (2022) Correction: Standardized and reproducible measurement of decision-making in mice.. eLife, 11 pp. e84310.

Urai, Anne E, Doiron, Brent, Leifer, Andrew M , Churchland, Anne K (2022) Large-scale neural recordings call for new insights to link brain and behavior. Nature Neuroscience,

Roach, James, Churchland, Anne , Engel, Tatiana (2022) Two roles for choice selective inhibition in decision-making circuits.

Macpherson, Tom, Churchland, Anne, Sejnowski, Terry, DiCarlo, James, Kamitani, Yukiyasu, Takahashi, Hidehiko , Hikida, Takatoshi (2021) Natural and Artificial Intelligence: A brief introduction to the interplay between AI and neuroscience research. Neural Networks,

Couto, Joao, Musall, Simon, Sun, Xiaonan R, Khanal, Anup, Gluf, Steven, Saxena, Shreya, Kinsella, Ian, Abe, Taiga, Cunningham, John P, Paninski, Liam , Churchland, Anne K (2021) Chronic, cortex-wide imaging of specific cell populations during behavior.. Nature Protocols,

International Brain Laboratory, , Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolo, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne K, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Ines, Mainen, Zachary F, Meijer, Guido, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Rossant, Cyrille, Sanders, Joshua, Socha, Karolina, Terry, Rebecca, Urai, Anne E, Vergara, Hernando, Wells, Miles, Wilson, Christian J, Witten, Ilana B, Wool, Lauren E , Zador, Anthony M (2021) Standardized and reproducible measurement of decision-making in mice.. eLife, 10

Pisupati, Sashank, Chartarifsky-Lynn, Lital, Khanal, Anup , Churchland, Anne K (2021) Lapses in perceptual decisions reflect exploration.. eLife, 10 pp. 1-27.

Urai, Anne E, Aguillon-Rodriguez, Valeria, Laranjeira, Inês C, Cazettes, Fanny, International Brain Laboratory, , Mainen, Zachary F , Churchland, Anne K (2021) Citric Acid Water as an Alternative to Water Restriction for High-Yield Mouse Behavior.. eNeuro, 8(1) pp. 1-8.

Huang, Longwen, Kebschull, Justus M, Fürth, Daniel, Musall, Simon, Kaufman, Matthew T, Churchland, Anne K , Zador, Anthony M (2020) BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals.. Cell, 182(1) pp. 177-188.e27.

Saxena, S., Kinsella, I., Musall, S., Kim, S.H., Meszaros, J., Thibodeaux, D.N., Kim, C., Cunningham, J., Hillman, E.M.C., Churchland, A. , Paninski, L. (2020) Localized Semi-Nonnegative Matrix Factorization (LocaNMF) of Widefield Calcium Imaging Data. PLoS Comput Biol, 16(4) pp. e1007791.

The International Brain Laboratory, , Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolò, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Hausser, Michael, Hofer, Sonja, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Inês, Mainen, Zachary, Meijer, Guido, Miska, Nathaniel, Mrsic-Flogel, Thomas, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Sanders, Josh, Socha, Karolina, Terry, Rebecca, Urai, Anne, Vergara, Hernando, Wells, Miles, Wilson, Christian, Witten, Ilana, Wool, Lauren , Zador, Anthony (2020) A standardized and reproducible method to measure decision-making in mice. bioRxiv,

Musall, S., Urai, A. E., Sussillo, D. , Churchland, A. K. (2019) Harnessing behavioral diversity to understand neural computations for cognition. Curr Opin Neurobiol, 58 pp. 229-238.

Najafi, F., Elsayed, G. F., Cao, R., Pnevmatikakis, E., Latham, P. E., Cunningham, J. P. , Churchland, A. K. (2019) Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning. Neuron, 105(1) pp. 165-179.

Musall, S., Kaufman, M. T., Juavinett, A. L., Gluf, S. , Churchland, A. K. (2019) Single-trial neural dynamics are dominated by richly varied movements. Nat Neurosci, 22(10) pp. 1677-1686.

Juavinett, A. L., Bekheet, G. , Churchland, A. K. (2019) Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice. Elife, 8

Najafi, F. , Churchland, A. K. (2018) Perceptual Decision-Making: A Field in the Midst of a Transformation. Neuron, 100(2) pp. 453-462.

Odoemene, O., Pisupati, S., Nguyen, H. , Churchland, A. K. (2018) Visual evidence accumulation guides decision-making in unrestrained mice. J Neurosci, 38(47) pp. 10143-10155.

Huang, Longwen, Kebschull, Justus, Furth, Daniel, Musall, Simon, Kaufman, Matthew T., Churchland, Anne K. , Zador, Anthony (2018) High-throughput mapping of mesoscale connectomes in individual mice. bioRxiv,

Giovannucci, A., Friedrich, J., Kaufman, M., Churchland, A. K., Chklovskii, D., Paninski, L. , Pnevmatikakis, E. A. (2017) OnACID: Online analysis of calcium imaging data in real time. 31st Annual Conference on Neural Information Processing Systems, NIPS 2017;, 2017-D pp. 2382-2392.

Juavinett, A. L., Erlich, J. C. , Churchland, A. K. (2017) Decision-making behaviors: weighing ethology, complexity, and sensorimotor compatibility. Curr Opin Neurobiol, 49 pp. 42-50.

Licata, A. M., Kaufman, M. T., Raposo, D., Ryan, M. B., Sheppard, J. P. , Churchland, A. K. (2017) Posterior parietal cortex guides visual decisions in rats. J Neurosci, 37(19) pp. 4954-4966.

Churchland, A. (2016) Q&A with Anne Churchland. Neuron, 92(5) pp. 940-942.

Kaufman, M. T. , Churchland, A. K. (2016) Many paths from state to state. Nat Neurosci, 19(12) pp. 1541-1542.

Churchland, Anne K. , Kiani, Roozbeh (2016) Three challenges for connecting model to mechanism in decision-making. Current Opinion in Behavioral Sciences, 11 pp. 74-80.

Pisupati, S., Chartarifsky, L. , Churchland, A. K. (2016) Decision Activity in Parietal Cortex - Leader or Follower?. Trends Cogn Sci,

Churchland, A. K. , Abbott, L. F. (2016) Conceptual and technical advances define a key moment for theoretical neuroscience. Nat Neurosci, 19(3) pp. 348-9.

Churchland, Anne , Lisberger, Stephen (2015) Contributions from different model organisms to brain research. Neuroscience, 296 pp. 1-2.

Kanitscheider, I., Brown, A., Pouget, A. , Churchland, A. K. (2015) Multisensory decisions provide support for probabilistic number representations. Journal of Neurophysiology, 113(10) pp. 3490-3498.

Raposo, David, Kaufman, Matthew T. , Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience, 17(12) pp. 1784-1792.

Odoemene, O. , Churchland, A.K. (2014) Listening for the Right Sounds. Neuron, 82(5) pp. 944-945.

Kiani, R., Churchland, A. K. , Shadlen, M. N. (2013) Integration of Direction Cues Is Invariant to the Temporal Gap between Them. Journal of Neuroscience, 33(42) pp. 16483-9.

Carandini, M. , Churchland, A. K. (2013) Probing perceptual decisions in rodents. Nature Neuroscience, 16(7) pp. 824-831.

Kaufman, M. T. , Churchland, A. K. (2013) Cognitive neuroscience: Sensory noise drives bad decisions. Nature, 496(7444) pp. 172-173.

Sheppard, J. P., Raposo, D. , Churchland, A. K. (2013) Dynamic weighting of multisensory stimuli shapes decision-making in rats and humans. Journal of Vision, 13(6)

Drugowitsch, J., Moreno-Bote, R., Churchland, A. K., Shadlen, M. N. , Pouget, A. (2012) The Cost of Accumulating Evidence in Perceptual Decision Making. Journal of Neuroscience, 32(11) pp. 3612-3628.

Raposo, D., Sheppard, J. P., Schrater, P. R. , Churchland, A. K. (2012) Multisensory decision-making in rats and humans. Journal of Neuroscience, 32(11) pp. 3726-35.

Churchland, A. K. , Ditterich, J. (2012) New advances in understanding decisions among multiple alternatives. Current Opinion in Neurobiology, (0)

Churchland, A. K. (2011) Normalizing relations between the senses. Nature Neuroscience, 14(6) pp. 672-3.

Churchland, A. K., Kiani, R., Chaudhuri, R., Wang, X. J., Pouget, A. , Shadlen, M. N. (2011) Variance as a Signature of Neural Computations during Decision Making. Neuron, 69(4) pp. 818-831.

Beck, J. M., Ma, W. J., Kiani, R., Hanks, T., Churchland, A. K., Roitman, J., Shadlen, M. N., Latham, P. E. , Pouget, A. (2008) Probabilistic Population Codes for Bayesian Decision Making. Neuron, 60(6) pp. 1142-1152.

Churchland, A. K., Kiani, R. , Shadlen, M. N. (2008) Decision-making with multiple alternatives. Nature Neuroscience, 11(6) pp. 693-702.

Churchland, A. K., Huang, X. , Lisberger, S. G. (2007) Responses of neurons in the medial superior temporal visual area to apparent motion stimuli in macaque monkeys. Journal of Neurophysiology, 97(1) pp. 272-282.

Churchland, A. K. , Lisberger, S. G. (2005) Relationship between extraretinal component of firing rate and eye speed in area MST of Macaque monkeys. Journal of Neurophysiology, 94(4) pp. 2416-2426.

Churchland, A. K. , Lisberger, S. G. (2005) Discharge properties of MST neurons that project to the frontal pursuit area in macaque monkeys. Journal of Neurophysiology, 94(2) pp. 1084-1090.

Churchland, A. K., Gardner, J. L., Chou, I. H., Priebe, N. J. , Lisberger, S. G. (2003) Directional anisotropies reveal a functional segregation of visual motion processing for perception and action. Neuron, 37(6) pp. 1001-1011.

Blake, D. T., Strata, F., Churchland, A. K. , Merzenich, M. M. (2002) Neural correlates of instrumental learning in primary auditory cortex. Proceedings of the National Academy of Sciences of the United States of America, 99(15) pp. 10114-10119.

Churchland, A. K. , Lisberger, S. G. (2002) Gain control in human smooth-pursuit eye movements. Journal of Neurophysiology, 87(6) pp. 2936-2945.

Rambold, H., Churchland, A. K., Selig, Y., Jasmin, L. , Lisberger, S. G. (2002) Partial ablations of the flocculus and ventral paraflocculus in monkeys cause linked deficits in smooth pursuit eye movements and adaptive modification of the VOR. Journal of Neurophysiology, 87(2) pp. 912-924.

Diamond, A., Churchland, A. K., Cruess, L. , Kirkham, N. Z. (1999) Early developments in the ability to understand the relation between stimulus and reward. Developmental Psychology, 35(6) pp. 1507-1517.