SciApps: A cloud-based platform for reproducible bioinformatics workflows

Wang, L., Lu, Z., Van Buren, P., Ware, D. (2018) SciApps: A cloud-based platform for reproducible bioinformatics workflows. Bioinformatics. ISSN 1367-4803

URL: https://www.ncbi.nlm.nih.gov/pubmed/29897418
DOI: 10.1093/bioinformatics/bty439

Abstract

Motivation: The rapid accumulation of both sequence and phenotype data generated by high-throughput methods has increased the need to store and analyze data on distributed storage and computing systems. Efficient data management across these heterogeneous systems requires a workflow management system to simplify the task of analysis through automation and make large-scale bioinformatics analyses accessible and reproducible. Results: We developed SciApps, a web-based platform for reproducible bioinformatics workflows. The platform is designed to automate the execution of modular Agave apps and support execution of workflows on local clusters or in a cloud. Two workflows, one for association and one for annotation, are provided as exemplar scientific use cases. Availability: https://www.sciapps.org. Supplementary information: Supplementary data are available at Bioinformatics online.

Item Type: Paper
Subjects: bioinformatics
CSHL Authors:
Communities: CSHL labs > Ware lab
Depositing User: Matt Covey
Date Deposited: 20 Jun 2018 21:06
Last Modified: 20 Jun 2018 21:06
Related URLs:
URI: http://repository.cshl.edu/id/eprint/36745

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