GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data

Rzhetsky, A., Iossifov, I., Koike, T., Krauthammer, M., Kra, P., Morris, M., Yu, H., Duboue, P. A., Weng, W., Wilbur, W. J., Hatzivassiloglou, V., Friedman, C. (February 2004) GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. J Biomed Inform, 37 (1). pp. 43-53. ISSN 1532-0464 (Print)1532-0464 (Linking)

URL: http://www.ncbi.nlm.nih.gov/pubmed/15016385
DOI: 10.1016/j.jbi.2003.10.001

Abstract

The immense growth in the volume of research literature and experimental data in the field of molecular biology calls for efficient automatic methods to capture and store information. In recent years, several groups have worked on specific problems in this area, such as automated selection of articles pertinent to molecular biology, or automated extraction of information using natural-language processing, information visualization, and generation of specialized knowledge bases for molecular biology. GeneWays is an integrated system that combines several such subtasks. It analyzes interactions between molecular substances, drawing on multiple sources of information to infer a consensus view of molecular networks. GeneWays is designed as an open platform, allowing researchers to query, review, and critique stored information.

Item Type: Paper
Uncontrolled Keywords: Artificial Intelligence Computer Graphics Database Management Systems Databases, Factual Documentation/methods Gene Expression Regulation/physiology Information Storage and Retrieval/ methods Internet Metabolism/ physiology Natural Language Processing Periodicals as Topic Signal Transduction/physiology Software User-Computer Interface Vocabulary, Controlled
Subjects: bioinformatics
bioinformatics > genomics and proteomics > databases
bioinformatics > genomics and proteomics > datasets
CSHL Authors:
Communities: CSHL labs > Iossifov lab
Depositing User: Matt Covey
Date: February 2004
Date Deposited: 01 Apr 2015 19:02
Last Modified: 01 Apr 2015 19:02
Related URLs:
URI: http://repository.cshl.edu/id/eprint/31299

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