Large scale sequencing

Stein, L. (August 2003) Large scale sequencing. Current Protocols in Bioinformatics. Unit 11.01. ISSN 1934-340X (Electronic)1934-3396 (Linking)

URL: http://www.ncbi.nlm.nih.gov/pubmed/18428694
DOI: 10.1002/0471250953.bi1101s02

Abstract

DNA sequencing and assembly is the Philosopher's Stone of bioinformatics, where the raw material of wet lab enzymatic chemistry is transformed into the bits and bytes of sequence information. The sequence information becomes the foundation for extensive downstream analyses. This unit provides a brief overview of the sequencing process. It describes several software programs typically used for base calling, assembling, and finishing sequence data such as STADEN, Phred, Phrap, and Consed.

Item Type: Paper
Subjects: bioinformatics > genomics and proteomics > alignment
bioinformatics > genomics and proteomics > analysis and processing
bioinformatics > genomics and proteomics > annotation
bioinformatics
bioinformatics > genomics and proteomics
bioinformatics > genomics and proteomics > Mapping and Rendering
bioinformatics > genomics and proteomics > alignment > sequence alignment
bioinformatics > genomics and proteomics > annotation > sequence annotation
bioinformatics > genomics and proteomics > analysis and processing > Sequence Data Processing
bioinformatics > genomics and proteomics > Mapping and Rendering > Sequence Rendering
CSHL Authors:
Communities: CSHL labs > Stein lab
Depositing User: Matt Covey
Date: August 2003
Date Deposited: 27 Mar 2013 19:01
Last Modified: 27 Mar 2013 19:01
Related URLs:
URI: http://repository.cshl.edu/id/eprint/28031

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