The SNP Consortium website: past, present and future

Thorisson, G. A., Stein, L. D. (January 2003) The SNP Consortium website: past, present and future. Nucleic Acids Research, 31 (1). pp. 124-127. ISSN 0305-1048

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URL: http://www.ncbi.nlm.nih.gov/pubmed/12519964
DOI: 10.1093/nar/gkg052

Abstract

The SNP Consortium website (http://snp.cshl.org) has undergone many changes since its initial conception three years ago. The database back end has been changed from the venerable ACeDB to the more scalable MySQL engine. Users can access the data via gene or single nucleotide polymorphism (SNP) keyword searches and browse or dump SNP data to textfiles. A graphical genome browsing interface shows SNPs mapped onto the genome assembly in the context of externally available gene predictions and other features. SNP allele frequency and genotype data are available via FTP-download and on individual SNP report web pages. SNP linkage maps are available for download and for browsing in a comparative map viewer. All software components of the data coordinating center (DCC) website (http://snp.cshl.org) are open source.

Item Type: Paper
Uncontrolled Keywords: Chromosome Mapping Data Collection *Databases, Nucleic Acid Forecasting Gene Frequency Genotype Humans Information Storage and Retrieval Internet Linkage (Genetics) *Polymorphism, Single Nucleotide Software Design
Subjects: bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification
bioinformatics > genomics and proteomics > genetics & nucleic acid processing
bioinformatics > genomics and proteomics
bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > single nucleotide polymorphism
CSHL Authors:
Communities: CSHL labs > Stein lab
Depositing User: Matt Covey
Date: January 2003
Date Deposited: 01 Jul 2013 18:54
Last Modified: 01 Jul 2013 18:54
PMCID: PMC165499
Related URLs:
URI: http://repository.cshl.edu/id/eprint/27869

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