Hawkeye: An interactive visual analytics tool for genome assemblies

Schatz, M. C., Phillippy, A. M., Shneiderman, B., Salzberg, S. L. (2007) Hawkeye: An interactive visual analytics tool for genome assemblies. Genome Biology, 8 (3). ISSN 14747596 (ISSN)

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URL: http://www.ncbi.nlm.nih.gov/pubmed/17349036
DOI: 10.1186/gb-2007-8-3-r34

Abstract

Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye. © 2007 Schatz et al.; licensee BioMed Central Ltd.

Item Type: Paper
Uncontrolled Keywords: analytical error article base pairing classification computer analysis computer program contig mapping gene sequence genetic database genome genome analysis Internet statistical analysis biology computer graphics DNA sequence methodology Computational Biology Sequence Analysis, DNA Software
Subjects: bioinformatics
bioinformatics > genomics and proteomics > computers
bioinformatics > genomics and proteomics > genetics & nucleic acid processing
bioinformatics > genomics and proteomics
bioinformatics > genomics and proteomics > computers > computer software
bioinformatics > genomics and proteomics > genetics & nucleic acid processing > genomes
CSHL Authors:
Communities: CSHL labs > Schatz lab
Depositing User: Matt Covey
Date: 2007
Date Deposited: 15 Mar 2013 17:46
Last Modified: 15 Mar 2013 17:46
PMCID: PMC1868940
Related URLs:
URI: http://repository.cshl.edu/id/eprint/27832

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