Manipulation of FASTQ data with Galaxy

Blankenberg, D., Gordon, A., Von Kuster, G., Coraor, N., Taylor, J., Nekrutenko, A. (July 2010) Manipulation of FASTQ data with Galaxy. Bioinformatics, 26 (14). pp. 1783-1785. ISSN 1367-4803

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URL: https://www.ncbi.nlm.nih.gov/pubmed/20562416
DOI: 10.1093/bioinformatics/btq281

Abstract

Here, we describe a tool suite that functions on all of the commonly known FASTQ format variants and provides a pipeline for manipulating next generation sequencing data taken from a sequencing machine all the way through the quality filtering steps.

Item Type: Paper
Subjects: bioinformatics > genomics and proteomics > annotation > sequence annotation
bioinformatics > genomics and proteomics > analysis and processing > Sequence Data Processing
bioinformatics > genomics and proteomics > Mapping and Rendering > Sequence Rendering
CSHL Authors:
Communities: CSHL labs > Hannon lab
Depositing User: CSHL Librarian
Date: July 2010
Date Deposited: 27 Sep 2011 15:34
Last Modified: 28 Feb 2018 20:48
PMCID: PMC2894519
Related URLs:
URI: http://repository.cshl.edu/id/eprint/15357

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